Variant report

Variant	rs838642
Chromosome Location	chr3:143201525-143201526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143193715..143198774-chr3:143199748..143204167,7	K562	blood:
2	chr3:143196850..143198555-chr3:143200057..143202935,2	K562	blood:
3	chr3:143183215..143184884-chr3:143201096..143202631,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11707120	0.85[ASN][1000 genomes]
rs13059261	0.89[CHB][hapmap]
rs13079196	0.89[CHB][hapmap]
rs1404568	0.89[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143163800-143203400	Weak transcription	Ovary	ovary
2	chr3:143174400-143220400	Weak transcription	Fetal Lung	lung
3	chr3:143176800-143220400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:143177800-143204400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:143178000-143203200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:143179400-143220400	Weak transcription	Brain Substantia Nigra	brain
7	chr3:143179800-143213400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:143185800-143213800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:143186000-143215600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:143186000-143223000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr3:143186400-143204400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr3:143191200-143211000	Weak transcription	Primary T cells from cord blood	blood
13	chr3:143191400-143231000	Weak transcription	Primary B cells from cord blood	blood
14	chr3:143192400-143211400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:143192400-143215200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr3:143196600-143203800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:143197000-143202800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:143197400-143201600	Weak transcription	Fetal Stomach	stomach
19	chr3:143197400-143203800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:143197800-143202200	Enhancers	HSMM	muscle
21	chr3:143198600-143201600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:143198600-143202200	Enhancers	NHDF-Ad	bronchial
23	chr3:143199600-143202200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr3:143199600-143203800	Weak transcription	NH-A	brain
25	chr3:143199800-143202200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:143199800-143203600	Weak transcription	A549	lung
27	chr3:143199800-143205200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:143200200-143213800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr3:143200800-143201600	Enhancers	HSMMtube	muscle
30	chr3:143200800-143201800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:143200800-143201800	Enhancers	Osteobl	bone
32	chr3:143200800-143202200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:143200800-143204000	Weak transcription	Aorta	Aorta
34	chr3:143201000-143202000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:143201000-143202200	Enhancers	Dnd41	blood
36	chr3:143201200-143201600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:143201200-143201800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:143201200-143201800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:143201200-143201800	Enhancers	Adipose Nuclei	Adipose
40	chr3:143201200-143202800	Enhancers	Primary B cells from peripheral blood	blood
41	chr3:143201400-143201600	Enhancers	Fetal Kidney	kidney
42	chr3:143201400-143202200	Enhancers	Esophagus	oesophagus
43	chr3:143201400-143202200	Enhancers	GM12878-XiMat	blood

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