Variant report
| Variant | rs839115 |
|---|---|
| Chromosome Location | chr12:86562616-86562617 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:45)
| rs_ID | r2[population] |
|---|---|
| rs10858411 | 1.00[CHB][hapmap] |
| rs1097997 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs11117189 | 1.00[CHB][hapmap] |
| rs1389292 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs1463750 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs1493414 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs1532263 | 1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs1689364 | 1.00[CHB][hapmap] |
| rs1698757 | 1.00[CHB][hapmap] |
| rs2452808 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs2471565 | 1.00[CHB][hapmap] |
| rs2897273 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs6538021 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6538027 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs7134944 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs7312245 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs7954833 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs839094 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs839099 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs839100 | 1.00[CHB][hapmap] |
| rs839106 | 1.00[CHB][hapmap] |
| rs839107 | 1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs839109 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs839112 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs839113 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs839114 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs839116 | 1.00[CHB][hapmap] |
| rs839119 | 1.00[CHB][hapmap] |
| rs839120 | 1.00[CHB][hapmap] |
| rs839124 | 1.00[CHB][hapmap] |
| rs839128 | 1.00[CHB][hapmap] |
| rs839134 | 1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs839138 | 1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs839139 | 1.00[CHB][hapmap];0.89[EUR][1000 genomes] |
| rs839147 | 1.00[CHB][hapmap] |
| rs839183 | 1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs839185 | 1.00[ASN][1000 genomes] |
| rs839186 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs839187 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs839188 | 1.00[ASN][1000 genomes] |
| rs839189 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs839191 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs844437 | 1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs858213 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs866893 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049179 | chr12:86056376-86799188 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv2761759 | chr12:86415936-86747726 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv518059 | chr12:86416212-86747726 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1041397 | chr12:86438607-86737558 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3442004 | chr12:86514695-86599965 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
