Variant report

Variant	rs839524
Chromosome Location	chr2:212815801-212815802
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10185729	0.84[GIH][hapmap]
rs1098066	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs2118890	0.84[GIH][hapmap]
rs6435681	0.91[CHD][hapmap];0.82[JPT][hapmap]
rs839513	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs839514	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs839529	0.81[AFR][1000 genomes]
rs839533	0.87[ASW][hapmap];0.91[YRI][hapmap]
rs839535	0.82[AFR][1000 genomes]
rs839539	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212806800-212816400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:212814600-212819800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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