Variant report

Variant	rs839915
Chromosome Location	chr2:21020903-21020904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20994978..20997045-chr2:21020734..21022749,2	K562	blood:
2	chr2:20553036..20555309-chr2:21020299..21023238,2	K562	blood:
3	chr2:21020884..21022716-chr2:21040300..21043196,2	K562	blood:
4	chr2:21020725..21022503-chr2:21444417..21447318,2	K562	blood:

Variant related genes	Relation type
ENSG00000252216	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12468102	0.96[EUR][1000 genomes]
rs12469525	0.96[EUR][1000 genomes]
rs12476001	0.92[EUR][1000 genomes]
rs16982023	0.96[EUR][1000 genomes]
rs16982026	1.00[EUR][1000 genomes]
rs16988072	0.92[EUR][1000 genomes]
rs16988079	0.92[EUR][1000 genomes]
rs17390286	0.96[EUR][1000 genomes]
rs340601	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340602	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340603	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340604	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340606	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340607	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340615	0.82[AMR][1000 genomes]
rs472692	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs490710	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs492399	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4971527	0.92[EUR][1000 genomes]
rs4971529	0.92[EUR][1000 genomes]
rs518968	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs519025	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs575246	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57864736	0.82[AMR][1000 genomes]
rs597781	1.00[EUR][1000 genomes]
rs645100	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs645150	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs649018	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs666471	1.00[EUR][1000 genomes]
rs685246	1.00[EUR][1000 genomes]
rs7600933	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20974600-21021800	Weak transcription	Thymus	Thymus
2	chr2:20994800-21021600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:20994800-21021600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:20994800-21021800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:20995200-21021600	Weak transcription	K562	blood
6	chr2:20997400-21021600	Weak transcription	Primary B cells from cord blood	blood
7	chr2:20998200-21021800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr2:21000400-21021400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:21003600-21021600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr2:21006200-21021600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:21006400-21021600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:21010400-21021800	Weak transcription	Primary T cells from cord blood	blood
13	chr2:21010600-21021600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr2:21015000-21021800	Weak transcription	Fetal Kidney	kidney
15	chr2:21016400-21021600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:21016800-21021600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:21017400-21021600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:21017800-21021600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr2:21018800-21021600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr2:21018800-21021600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr2:21019000-21021400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:21019000-21021600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr2:21019000-21021600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr2:21019000-21021600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr2:21019000-21021600	Weak transcription	A549	lung
26	chr2:21019000-21022200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr2:21019000-21022200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr2:21019200-21021400	Weak transcription	HepG2	liver
29	chr2:21019200-21021600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr2:21019200-21021600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr2:21019200-21021600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr2:21019200-21021600	Weak transcription	GM12878-XiMat	blood
33	chr2:21019200-21021600	Weak transcription	Hela-S3	cervix
34	chr2:21019400-21022200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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