Variant report

Variant	rs847647
Chromosome Location	chr7:102551947-102551948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 144 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10228495	0.93[CHD][hapmap];0.86[JPT][hapmap]
rs10241865	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10242028	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10250490	0.93[ASN][1000 genomes]
rs10257543	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs10271157	0.91[ASN][1000 genomes]
rs10271184	0.91[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs10273725	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10279449	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap]
rs10435335	0.92[EUR][1000 genomes]
rs10487283	0.85[CEU][hapmap]
rs10499952	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs10808120	0.81[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs1100044	0.99[EUR][1000 genomes]
rs1100046	0.96[ASN][1000 genomes]
rs11514917	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11543736	0.92[EUR][1000 genomes]
rs11970869	0.96[EUR][1000 genomes]
rs11972019	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs11972261	0.81[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs11972644	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs11973870	0.93[EUR][1000 genomes]
rs11976237	0.81[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap]
rs11978670	0.92[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11978768	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs11978799	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11980643	0.90[EUR][1000 genomes]
rs11981980	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.80[ASN][1000 genomes]
rs11983456	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs11983521	0.85[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs12056296	0.93[CEU][hapmap];0.99[EUR][1000 genomes]
rs12532495	0.97[EUR][1000 genomes]
rs12533386	0.99[EUR][1000 genomes]
rs12537977	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12540384	0.96[EUR][1000 genomes]
rs12666317	0.81[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs12666764	0.84[CEU][hapmap];0.93[EUR][1000 genomes]
rs12667218	0.93[EUR][1000 genomes]
rs12668434	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.86[ASN][1000 genomes]
rs12669668	0.85[CEU][hapmap];0.81[GIH][hapmap];0.86[TSI][hapmap]
rs12671803	0.95[EUR][1000 genomes]
rs13232194	0.91[JPT][hapmap]
rs13233521	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13242493	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1541519	0.86[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap]
rs1608651	0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs17136090	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17136137	0.96[EUR][1000 genomes]
rs1829957	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2009503	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2159022	0.92[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs2190673	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2228686	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2411056	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2411059	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28856331	0.94[ASN][1000 genomes]
rs2908412	0.85[CEU][hapmap]
rs35479298	0.97[EUR][1000 genomes]
rs3779029	0.93[EUR][1000 genomes]
rs41501847	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4296965	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4620204	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4729860	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4729873	0.81[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs56269620	0.84[ASN][1000 genomes]
rs56894117	0.93[EUR][1000 genomes]
rs56921864	0.96[EUR][1000 genomes]
rs57253646	0.80[EUR][1000 genomes]
rs57350619	0.93[EUR][1000 genomes]
rs57368671	0.95[EUR][1000 genomes]
rs57545514	0.96[EUR][1000 genomes]
rs57616389	0.97[EUR][1000 genomes]
rs57776797	0.93[EUR][1000 genomes]
rs58191643	0.96[EUR][1000 genomes]
rs58680618	0.90[EUR][1000 genomes]
rs58814323	0.81[EUR][1000 genomes]
rs59278165	0.96[EUR][1000 genomes]
rs59544295	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59709436	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60524601	0.93[EUR][1000 genomes]
rs60599650	0.93[EUR][1000 genomes]
rs61679881	0.96[EUR][1000 genomes]
rs6465876	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6465877	0.92[CEU][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs6465878	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6465879	0.92[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs6465880	0.91[ASN][1000 genomes]
rs6465882	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6465885	0.93[CEU][hapmap];0.97[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs6942855	0.92[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs6945369	0.93[EUR][1000 genomes]
rs6945997	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6946773	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs6947403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6949150	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs6951288	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs6953980	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6956781	0.92[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs6957434	0.92[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs6957771	0.99[EUR][1000 genomes]
rs6960428	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6967389	0.85[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6968713	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6969054	0.81[JPT][hapmap]
rs6975388	0.80[EUR][1000 genomes]
rs6975451	0.92[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs6976005	0.93[EUR][1000 genomes]
rs6977145	0.96[EUR][1000 genomes]
rs6978630	0.91[JPT][hapmap]
rs73406284	0.96[EUR][1000 genomes]
rs73406302	0.96[EUR][1000 genomes]
rs73408204	0.96[EUR][1000 genomes]
rs73408250	0.97[EUR][1000 genomes]
rs7778418	0.95[CHD][hapmap];0.81[JPT][hapmap]
rs7779145	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7779618	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs7780405	0.92[CEU][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap]
rs7780981	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs7782908	0.86[JPT][hapmap]
rs7785272	0.81[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs7789252	0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7794668	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7796335	0.96[EUR][1000 genomes]
rs7800387	0.84[CEU][hapmap]
rs7800548	0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7804322	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs847646	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs847648	0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs847649	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs847652	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs847656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs847658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs865865	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs869332	0.86[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs955992	0.92[CEU][hapmap];0.82[ASN][1000 genomes]
rs9690210	0.92[EUR][1000 genomes]
rs9718453	0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs847647	LRWD1	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102517200-102578200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:102538400-102553200	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:102539200-102553000	Weak transcription	Right Atrium	heart
4	chr7:102547000-102552200	Weak transcription	Stomach Mucosa	stomach
5	chr7:102547200-102554800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:102548200-102558000	Weak transcription	Pancreas	Pancrea
7	chr7:102549200-102553200	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:102549400-102552600	Weak transcription	HUVEC	blood vessel
9	chr7:102549400-102553400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:102549800-102553000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:102549800-102553200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:102550400-102552200	Weak transcription	HSMM	muscle
13	chr7:102550600-102553200	Weak transcription	Fetal Intestine Small	intestine
14	chr7:102550600-102553400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:102550800-102552800	Weak transcription	Fetal Stomach	stomach
16	chr7:102551000-102553200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:102551000-102553600	Weak transcription	Gastric	stomach
18	chr7:102551400-102553200	Weak transcription	Left Ventricle	heart
19	chr7:102551600-102554600	Strong transcription	K562	blood
20	chr7:102551800-102552600	Enhancers	Fetal Lung	lung

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