Variant report
| Variant | rs848067 |
|---|---|
| Chromosome Location | chr14:37296221-37296222 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs17105159 | 1.00[EUR][1000 genomes] |
| rs17105856 | 1.00[EUR][1000 genomes] |
| rs17105876 | 1.00[EUR][1000 genomes] |
| rs17105909 | 1.00[EUR][1000 genomes] |
| rs17105921 | 1.00[EUR][1000 genomes] |
| rs17105928 | 1.00[EUR][1000 genomes] |
| rs17105938 | 1.00[EUR][1000 genomes] |
| rs17105941 | 1.00[EUR][1000 genomes] |
| rs2065196 | 1.00[EUR][1000 genomes] |
| rs57705591 | 1.00[EUR][1000 genomes] |
| rs60846053 | 1.00[EUR][1000 genomes] |
| rs60910364 | 1.00[EUR][1000 genomes] |
| rs698294 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs712343 | 1.00[EUR][1000 genomes] |
| rs712344 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs712357 | 1.00[EUR][1000 genomes] |
| rs712360 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs712361 | 1.00[EUR][1000 genomes] |
| rs73256266 | 1.00[EUR][1000 genomes] |
| rs73256270 | 1.00[EUR][1000 genomes] |
| rs73256271 | 1.00[EUR][1000 genomes] |
| rs73256284 | 1.00[EUR][1000 genomes] |
| rs73256290 | 1.00[EUR][1000 genomes] |
| rs73256295 | 1.00[EUR][1000 genomes] |
| rs74044969 | 1.00[EUR][1000 genomes] |
| rs848056 | 1.00[EUR][1000 genomes] |
| rs848069 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs848070 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs848071 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs848078 | 1.00[EUR][1000 genomes] |
| rs848079 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047290 | chr14:36564568-37445157 | Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv534288 | chr14:37254539-37697745 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv1047409 | chr14:37276300-37356945 | Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:37294000-37296400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr14:37295000-37296400 | Enhancers | HUES64 Cell Line | embryonic stem cell |
