Variant report

Variant	rs848069
Chromosome Location	chr14:37295567-37295568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs17105159	1.00[EUR][1000 genomes]
rs17105856	1.00[EUR][1000 genomes]
rs17105876	1.00[EUR][1000 genomes]
rs17105909	1.00[EUR][1000 genomes]
rs17105921	1.00[EUR][1000 genomes]
rs17105928	1.00[EUR][1000 genomes]
rs17105938	1.00[EUR][1000 genomes]
rs17105941	1.00[EUR][1000 genomes]
rs2065196	1.00[EUR][1000 genomes]
rs57705591	1.00[EUR][1000 genomes]
rs60846053	1.00[EUR][1000 genomes]
rs60910364	1.00[EUR][1000 genomes]
rs698294	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs712343	1.00[EUR][1000 genomes]
rs712344	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs712351	1.00[YRI][hapmap]
rs712357	1.00[EUR][1000 genomes]
rs712360	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs712361	1.00[EUR][1000 genomes]
rs73256266	1.00[EUR][1000 genomes]
rs73256270	1.00[EUR][1000 genomes]
rs73256271	1.00[EUR][1000 genomes]
rs73256284	1.00[EUR][1000 genomes]
rs73256290	1.00[EUR][1000 genomes]
rs74044969	1.00[EUR][1000 genomes]
rs848056	1.00[EUR][1000 genomes]
rs848059	1.00[YRI][hapmap]
rs848060	1.00[YRI][hapmap]
rs848061	1.00[YRI][hapmap]
rs848062	1.00[YRI][hapmap]
rs848063	1.00[YRI][hapmap]
rs848064	1.00[YRI][hapmap]
rs848065	1.00[YRI][hapmap]
rs848066	1.00[YRI][hapmap]
rs848067	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs848070	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs848071	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs848078	1.00[EUR][1000 genomes]
rs848079	0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1047409	chr14:37276300-37356945	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37294000-37296400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr14:37294200-37296200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:37294600-37295800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:37295000-37296000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr14:37295000-37296400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr14:37295200-37295600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:37295200-37296000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr14:37295200-37296200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr14:37295200-37296200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr14:37295400-37296000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr14:37295400-37296000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:37295400-37296200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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