Variant report

Variant	rs848078
Chromosome Location	chr14:37288082-37288083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:37280026..37283216-chr14:37286097..37288094,3	MCF-7	breast:
2	chr14:37286521..37289196-chr14:37301777..37303457,2	MCF-7	breast:
3	chr14:37286811..37289259-chr14:37323877..37326404,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11850405	1.00[MEX][hapmap]
rs17105159	1.00[EUR][1000 genomes]
rs17105856	1.00[EUR][1000 genomes]
rs17105876	1.00[EUR][1000 genomes]
rs17105909	1.00[EUR][1000 genomes]
rs17105921	1.00[EUR][1000 genomes]
rs17105928	1.00[EUR][1000 genomes]
rs17105938	1.00[EUR][1000 genomes]
rs17105941	1.00[EUR][1000 genomes]
rs2065196	1.00[EUR][1000 genomes]
rs57705591	1.00[EUR][1000 genomes]
rs60846053	1.00[EUR][1000 genomes]
rs60910364	1.00[EUR][1000 genomes]
rs698294	1.00[EUR][1000 genomes]
rs712343	1.00[EUR][1000 genomes]
rs712344	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs712357	1.00[EUR][1000 genomes]
rs712360	1.00[EUR][1000 genomes]
rs712361	1.00[EUR][1000 genomes]
rs73256266	1.00[EUR][1000 genomes]
rs73256270	1.00[EUR][1000 genomes]
rs73256271	1.00[EUR][1000 genomes]
rs73256284	1.00[EUR][1000 genomes]
rs74044969	1.00[EUR][1000 genomes]
rs848056	1.00[EUR][1000 genomes]
rs848067	1.00[EUR][1000 genomes]
rs848069	1.00[EUR][1000 genomes]
rs848070	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs848071	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs848079	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1047409	chr14:37276300-37356945	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37285400-37291800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:37285600-37292200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:37286800-37289200	Weak transcription	HMEC	breast
4	chr14:37287400-37290200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:37287600-37288400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:37287600-37288400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:37287600-37288800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:37287600-37289000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:37287800-37288200	Weak transcription	NHEK	skin
10	chr14:37287800-37289400	Enhancers	K562	blood
11	chr14:37287800-37289600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:37288000-37288200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr14:37288000-37288200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr14:37288000-37288400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr14:37288000-37288400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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