Variant report

Variant	rs850830
Chromosome Location	chr6:64129089-64129090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1010057	0.81[AMR][1000 genomes]
rs1404779	0.81[AMR][1000 genomes]
rs1464865	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1464866	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs1525357	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1608812	0.92[ASN][1000 genomes]
rs1628449	0.88[ASN][1000 genomes]
rs1631333	0.92[ASN][1000 genomes]
rs1711906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1711919	0.92[ASN][1000 genomes]
rs1711927	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1711928	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1723497	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1723498	0.92[ASN][1000 genomes]
rs1723499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes]
rs1723500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes]
rs1723503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs1723527	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1741802	0.92[ASN][1000 genomes]
rs1741805	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1741810	0.81[AMR][1000 genomes]
rs1741813	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1779745	0.92[ASN][1000 genomes]
rs1779749	0.92[ASN][1000 genomes]
rs1857565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2005098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs2622277	1.00[CHB][hapmap]
rs2622306	0.84[ASN][1000 genomes]
rs2622308	0.84[ASN][1000 genomes]
rs2677027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs2677028	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2753064	0.84[ASN][1000 genomes]
rs2753065	0.84[ASN][1000 genomes]
rs2753073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes]
rs2753074	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2800019	0.84[ASN][1000 genomes]
rs2800020	0.84[ASN][1000 genomes]
rs2800021	0.84[ASN][1000 genomes]
rs2800024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2800025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2800029	0.92[ASN][1000 genomes]
rs2800031	0.81[AMR][1000 genomes]
rs7750785	0.81[AMR][1000 genomes]
rs824373	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs824374	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs824375	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs824376	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs824377	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs824378	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs824379	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs824388	0.92[ASN][1000 genomes]
rs824391	0.81[AMR][1000 genomes]
rs824392	0.81[AMR][1000 genomes]
rs824393	0.81[AMR][1000 genomes]
rs860349	0.92[ASN][1000 genomes]
rs865415	0.81[AMR][1000 genomes]
rs865416	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64128200-64129400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:64128200-64131200	Enhancers	HepG2	liver
3	chr6:64128400-64129400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:64128400-64129400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:64128400-64129800	Enhancers	Primary B cells from cord blood	blood
6	chr6:64128600-64129200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:64128600-64129200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:64128600-64129200	Enhancers	Fetal Intestine Small	intestine
9	chr6:64128600-64129400	Enhancers	Fetal Intestine Large	intestine
10	chr6:64128600-64129600	Enhancers	Liver	Liver
11	chr6:64128800-64129200	Enhancers	Duodenum Mucosa	Duodenum
12	chr6:64128800-64129400	Enhancers	A549	lung
13	chr6:64128800-64129600	Enhancers	GM12878-XiMat	blood

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