Variant report
| Variant | rs851688 |
|---|---|
| Chromosome Location | chr7:147492290-147492291 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs1101042 | 0.83[AFR][1000 genomes] |
| rs2373279 | 1.00[YRI][hapmap] |
| rs2538980 | 0.83[AFR][1000 genomes] |
| rs2708254 | 0.83[AFR][1000 genomes] |
| rs2708260 | 0.83[AFR][1000 genomes] |
| rs851664 | 0.83[AFR][1000 genomes] |
| rs851665 | 0.83[AFR][1000 genomes] |
| rs851671 | 0.83[AFR][1000 genomes] |
| rs851675 | 0.83[AFR][1000 genomes] |
| rs851677 | 0.83[AFR][1000 genomes] |
| rs851678 | 0.86[AFR][1000 genomes] |
| rs851680 | 0.83[AFR][1000 genomes] |
| rs851682 | 0.83[AFR][1000 genomes] |
| rs851687 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933973 | chr7:147438206-147549993 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 2 | nsv889397 | chr7:147471710-147585819 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
