Variant report

Variant	rs851715
Chromosome Location	chr7:147526906-147526907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10233374	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10233755	0.86[CHB][hapmap]
rs10246256	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1177007	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1186173	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs13235812	1.00[CEU][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1613285	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1861010	0.82[JPT][hapmap]
rs2160017	0.91[CHB][hapmap];0.85[GIH][hapmap]
rs2247143	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2373269	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2373270	0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2373273	0.81[JPT][hapmap]
rs2538972	0.82[JPT][hapmap]
rs2538974	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2538979	0.95[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap]
rs2538983	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2538988	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2538989	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2538990	0.91[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs2538992	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2538994	0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]
rs2708238	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2708239	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2708240	0.91[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap]
rs2708243	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs2708257	0.81[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap]
rs2708270	0.82[JPT][hapmap]
rs2710102	0.95[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap]
rs2710104	0.82[JPT][hapmap]
rs2710105	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs2710107	0.80[JPT][hapmap]
rs2710108	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2710114	0.82[JPT][hapmap]
rs2710117	0.82[JPT][hapmap]
rs2710139	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2710140	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2888536	0.95[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4140925	0.90[CHB][hapmap]
rs4305811	0.86[CHB][hapmap]
rs4308647	0.91[CHB][hapmap]
rs4725747	0.80[CEU][hapmap];0.86[CHB][hapmap]
rs4726893	0.91[CHB][hapmap]
rs6955775	0.91[CHB][hapmap]
rs6958954	0.91[CHB][hapmap]
rs759177	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs759178	0.95[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap]
rs7794345	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs851704	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv465193	chr7:147512619-147583680	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv608965	chr7:147512619-147583680	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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