Variant report
| Variant | rs851727 |
|---|---|
| Chromosome Location | chr7:147366954-147366955 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr7:147366883-147367083 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000230190 | TF binding region |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs17170638 | 1.00[CHB][hapmap];0.86[MEX][hapmap] |
| rs17327726 | 0.81[EUR][1000 genomes] |
| rs2190915 | 1.00[CHB][hapmap] |
| rs2373172 | 0.87[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs2373175 | 1.00[CHB][hapmap] |
| rs2373176 | 1.00[CHB][hapmap] |
| rs2888515 | 1.00[CHB][hapmap] |
| rs4310123 | 1.00[CHB][hapmap] |
| rs4379380 | 1.00[CHB][hapmap] |
| rs4383899 | 1.00[CHB][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs4383900 | 1.00[CHB][hapmap] |
| rs4436047 | 1.00[CHB][hapmap] |
| rs4520083 | 1.00[CHB][hapmap] |
| rs6961141 | 0.87[GIH][hapmap] |
| rs6964327 | 1.00[CHB][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap] |
| rs6964959 | 1.00[CHB][hapmap] |
| rs6970360 | 1.00[CHB][hapmap] |
| rs700316 | 0.83[YRI][hapmap] |
| rs731565 | 1.00[CHB][hapmap];0.87[MEX][hapmap] |
| rs73741881 | 1.00[ASN][1000 genomes] |
| rs7457657 | 1.00[CHB][hapmap] |
| rs758259 | 1.00[CHB][hapmap] |
| rs7779787 | 1.00[CHB][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs7786677 | 1.00[CHB][hapmap] |
| rs7799323 | 1.00[CHB][hapmap];0.81[EUR][1000 genomes] |
| rs7803219 | 1.00[CHB][hapmap] |
| rs851726 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs851734 | 1.00[CHB][hapmap] |
| rs851737 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs971440 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:147366600-147367000 | Enhancers | Brain Substantia Nigra | brain |
