Variant report

Variant	rs856274
Chromosome Location	chr14:97446958-97446959
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11622737	0.83[EUR][1000 genomes]
rs11851985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1280081	0.87[EUR][1000 genomes]
rs1683097	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1683107	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17094694	0.95[EUR][1000 genomes]
rs17094783	0.97[EUR][1000 genomes]
rs1738908	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17759833	0.87[EUR][1000 genomes]
rs17759977	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17760210	0.95[EUR][1000 genomes]
rs2179940	0.96[EUR][1000 genomes]
rs60617803	0.97[EUR][1000 genomes]
rs60900692	0.97[EUR][1000 genomes]
rs6575605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs710266	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs710267	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7149912	0.93[EUR][1000 genomes]
rs74076840	0.97[EUR][1000 genomes]
rs74076841	0.97[EUR][1000 genomes]
rs74076845	0.97[EUR][1000 genomes]
rs74076846	0.97[EUR][1000 genomes]
rs74076847	0.97[EUR][1000 genomes]
rs74076849	0.97[EUR][1000 genomes]
rs74076850	0.97[EUR][1000 genomes]
rs74076851	0.97[EUR][1000 genomes]
rs74076853	0.97[EUR][1000 genomes]
rs74076856	0.97[EUR][1000 genomes]
rs74076857	0.97[EUR][1000 genomes]
rs74078739	0.89[EUR][1000 genomes]
rs74078741	0.92[EUR][1000 genomes]
rs856225	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs856266	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs856271	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs856279	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv902212	chr14:97413032-97474908	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1048462	chr14:97421360-97804598	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs856274	VRK1	cis	parietal	SCAN
rs856274	PAPOLA	cis	parietal	SCAN
rs856274	SERPINA13	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97443000-97447200	Enhancers	Brain Germinal Matrix	brain

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