Variant report

Variant	rs858145
Chromosome Location	chr20:24064753-24064754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24055988..24059191-chr20:24062534..24066385,4	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1006194	0.83[EUR][1000 genomes]
rs2005624	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2013710	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2208012	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6036640	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6036644	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6036645	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6036650	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6036653	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6036654	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6036664	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049389	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6049390	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6049392	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6049394	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6049403	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6049416	0.93[EUR][1000 genomes]
rs6049417	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6049419	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs721314	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs761864	0.80[EUR][1000 genomes]
rs761865	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs858140	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs858141	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs858144	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910775	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs974784	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs974785	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24064400-24064800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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