Variant report

Variant	rs859647
Chromosome Location	chr1:172696733-172696734
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172688546..172689151-chr1:172696697..172697446,2	MCF-7	breast:
2	chr1:172578385..172579260-chr1:172696065..172697862,5	MCF-7	breast:
3	chr1:172578808..172579312-chr1:172696717..172697220,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10912460	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1102704	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102706	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102707	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136569	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs704845	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859618	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs859619	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs859621	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs859623	0.87[EUR][1000 genomes]
rs859631	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs859633	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859634	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859636	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859637	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859638	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859639	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859641	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859643	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859644	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859648	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859673	0.86[EUR][1000 genomes]
rs863578	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172689200-172696800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:172689200-172700400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:172693400-172712200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:172693800-172697400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:172694600-172697400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:172695800-172697000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:172696000-172696800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr1:172696000-172697200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:172696000-172697600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:172696400-172696800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:172696400-172696800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:172696600-172696800	Enhancers	K562	blood

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