Variant report

Variant	rs861761
Chromosome Location	chr7:105205955-105205956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105199426..105202631-chr7:105202934..105206159,4	K562	blood:
2	chr7:105135206..105139003-chr7:105202925..105206444,3	K562	blood:

Variant related genes	Relation type
ENSG00000091127	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1706902	0.91[EUR][1000 genomes]
rs1721503	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1721505	0.95[EUR][1000 genomes]
rs1728647	0.88[EUR][1000 genomes]
rs1728654	0.91[EUR][1000 genomes]
rs59550841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972569	0.86[AFR][1000 genomes]
rs711428	0.83[EUR][1000 genomes]
rs7805216	0.83[AFR][1000 genomes]
rs864687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs865326	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv464668	chr7:105088693-105208492	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv608069	chr7:105088693-105208492	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105173400-105208200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:105173400-105210200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:105174000-105210200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:105174000-105212200	Weak transcription	Fetal Heart	heart
5	chr7:105174200-105210200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:105174200-105213800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:105174600-105210400	Weak transcription	Psoas Muscle	Psoas
8	chr7:105174600-105213200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:105174800-105209200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:105175000-105210400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:105175400-105211000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:105175600-105209600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:105176000-105208600	Strong transcription	Placenta	Placenta
14	chr7:105176000-105210000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:105176000-105210200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:105176000-105210400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:105176000-105210400	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:105176200-105210400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr7:105176200-105210400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr7:105176400-105209200	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:105176600-105210200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:105176800-105210400	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr7:105177000-105209200	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:105177000-105210200	Strong transcription	Liver	Liver
25	chr7:105177200-105209400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:105183600-105211000	Weak transcription	Small Intestine	intestine
27	chr7:105186400-105206600	Strong transcription	Fetal Muscle Trunk	muscle
28	chr7:105186400-105210400	Strong transcription	Adipose Nuclei	Adipose
29	chr7:105187800-105210800	Weak transcription	Stomach Mucosa	stomach
30	chr7:105188000-105214200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:105191000-105208200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr7:105191000-105210200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr7:105191800-105207600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:105193000-105208200	Weak transcription	Right Ventricle	heart
35	chr7:105193200-105221400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr7:105193200-105221600	Weak transcription	Aorta	Aorta
37	chr7:105194600-105210200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr7:105194600-105211000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:105194800-105209200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:105195000-105209600	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr7:105195600-105207600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr7:105196000-105221600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr7:105196200-105212200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr7:105197800-105210200	Strong transcription	Osteobl	bone
45	chr7:105198000-105206200	Strong transcription	HUVEC	blood vessel
46	chr7:105198200-105209600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr7:105198400-105207000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr7:105198400-105208000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr7:105198400-105209000	Strong transcription	Primary T cells from cord blood	blood
50	chr7:105198400-105209400	Strong transcription	Fetal Intestine Small	intestine

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