Variant report
Variant | rs864664 |
---|---|
Chromosome Location | chr6:101391916-101391917 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-GRIK2-4 | chr6:101391882-101391952 | NONHSAT114166 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1069049 | 0.95[CEU][hapmap];0.89[EUR][1000 genomes] |
rs12174782 | 0.91[CEU][hapmap] |
rs1754397 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1754398 | 0.91[AFR][1000 genomes];0.94[EUR][1000 genomes] |
rs1754399 | 0.83[ASN][1000 genomes] |
rs1765058 | 0.85[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs2244658 | 0.84[EUR][1000 genomes] |
rs2771415 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2771419 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2786233 | 0.83[ASN][1000 genomes] |
rs35467606 | 0.83[EUR][1000 genomes] |
rs4270794 | 0.82[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs4339475 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs592436 | 0.95[CEU][hapmap];0.85[EUR][1000 genomes] |
rs593129 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs595422 | 0.83[ASN][1000 genomes] |
rs607079 | 0.83[ASN][1000 genomes] |
rs618919 | 0.81[EUR][1000 genomes] |
rs622353 | 0.84[AFR][1000 genomes];0.91[EUR][1000 genomes] |
rs638823 | 0.87[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs638884 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs655038 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6570975 | 0.92[EUR][1000 genomes] |
rs6570976 | 0.82[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs657915 | 0.95[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs661142 | 0.93[EUR][1000 genomes] |
rs669716 | 0.89[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs673588 | 0.82[ASN][1000 genomes] |
rs680857 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs681989 | 0.80[ASN][1000 genomes] |
rs705599 | 0.90[CEU][hapmap] |
rs705605 | 0.91[CEU][hapmap] |
rs705607 | 0.90[CEU][hapmap] |
rs705608 | 0.91[CEU][hapmap] |
rs705610 | 0.81[EUR][1000 genomes] |
rs705623 | 0.87[AFR][1000 genomes];0.92[EUR][1000 genomes] |
rs7738575 | 0.82[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs7739574 | 0.95[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs7750098 | 0.94[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs7750122 | 0.82[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs7763793 | 0.82[AFR][1000 genomes];0.92[EUR][1000 genomes] |
rs817236 | 0.84[EUR][1000 genomes] |
rs817675 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs846781 | 0.85[CEU][hapmap] |
rs846794 | 0.91[CEU][hapmap] |
rs846797 | 0.84[EUR][1000 genomes] |
rs846798 | 0.90[CEU][hapmap];0.82[EUR][1000 genomes] |
rs861685 | 0.83[ASN][1000 genomes] |
rs863658 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs864659 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9377242 | 0.82[AFR][1000 genomes];0.93[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949535 | chr6:100740293-101469052 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1020692 | chr6:101136992-101426071 | ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
3 | nsv886457 | chr6:101158950-101487473 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
4 | nsv1020400 | chr6:101172705-101981665 | Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
5 | nsv538390 | chr6:101172705-101981665 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
6 | nsv1019213 | chr6:101225650-101623140 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
7 | nsv538391 | chr6:101225650-101623140 | Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
8 | esv2763587 | chr6:101277874-101510491 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:101374600-101398000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr6:101391800-101393400 | Bivalent Enhancer | iPS-18 Cell Line | embryonic stem cell |