Variant report

Variant	rs864770
Chromosome Location	chr1:155839764-155839765
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155835432..155838182-chr1:155838226..155840731,2	K562	blood:
2	chr1:155827057..155829961-chr1:155838512..155840358,2	K562	blood:
3	chr1:155828278..155831110-chr1:155838858..155840662,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RXFP4-3	chr1:155839565-155841887	NONHSAT006771

Variant related genes	Relation type
ENSG00000132718	Chromatin interaction
ENSG00000116580	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12722806	1.00[AMR][1000 genomes]
rs1889531	1.00[AMR][1000 genomes]
rs4661150	1.00[AMR][1000 genomes]
rs822517	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155829600-155841000	Weak transcription	Pancreas	Pancrea
2	chr1:155830000-155869000	Weak transcription	Gastric	stomach
3	chr1:155830200-155841000	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:155830400-155840600	Weak transcription	Spleen	Spleen
5	chr1:155830400-155841200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:155830400-155843800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:155830400-155843800	Weak transcription	Lung	lung
8	chr1:155830400-155865800	Weak transcription	Esophagus	oesophagus
9	chr1:155830600-155841000	Weak transcription	Left Ventricle	heart
10	chr1:155830600-155850200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:155830600-155866800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr1:155830800-155850400	Weak transcription	Adipose Nuclei	Adipose
13	chr1:155830800-155852000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr1:155831000-155840000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr1:155831000-155840800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:155831000-155848800	Weak transcription	Fetal Intestine Large	intestine
17	chr1:155831000-155849200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:155831000-155850000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr1:155831000-155851000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr1:155831000-155862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:155831000-155862800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:155831000-155863000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr1:155831200-155841200	Weak transcription	NHDF-Ad	bronchial
24	chr1:155831200-155862800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr1:155831400-155840400	Weak transcription	Fetal Heart	heart
26	chr1:155831400-155859000	Weak transcription	HUVEC	blood vessel
27	chr1:155832600-155841200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr1:155834600-155850200	Weak transcription	HSMM	muscle
29	chr1:155835000-155840800	Weak transcription	HSMMtube	muscle
30	chr1:155836200-155842000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:155836400-155866400	Weak transcription	Primary B cells from cord blood	blood
32	chr1:155837200-155840800	Genic enhancers	Brain Hippocampus Middle	brain
33	chr1:155837200-155840800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr1:155837200-155841000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:155837200-155841000	Genic enhancers	Brain Cingulate Gyrus	brain
36	chr1:155837200-155841000	Strong transcription	Fetal Stomach	stomach
37	chr1:155837200-155841200	Genic enhancers	Brain Anterior Caudate	brain
38	chr1:155837200-155843000	Weak transcription	Fetal Thymus	thymus
39	chr1:155837400-155841400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr1:155837400-155841800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:155837400-155844400	Enhancers	Fetal Brain Male	brain
42	chr1:155837600-155863000	Weak transcription	Colonic Mucosa	Colon
43	chr1:155837800-155840400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:155837800-155841000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:155837800-155841000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr1:155838000-155839800	Strong transcription	Fetal Muscle Trunk	muscle
47	chr1:155838000-155839800	Strong transcription	Stomach Smooth Muscle	stomach
48	chr1:155838000-155840600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
49	chr1:155838000-155841200	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr1:155838000-155841400	Strong transcription	Aorta	Aorta

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