Variant report

Variant	rs865396
Chromosome Location	chr5:118220761-118220762
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs17144674	1.00[EUR][1000 genomes]
rs17144719	1.00[EUR][1000 genomes]
rs17144749	1.00[EUR][1000 genomes]
rs17144777	1.00[EUR][1000 genomes]
rs17144807	1.00[EUR][1000 genomes]
rs17144815	1.00[EUR][1000 genomes]
rs56253801	1.00[EUR][1000 genomes]
rs57269254	1.00[EUR][1000 genomes]
rs57626866	1.00[EUR][1000 genomes]
rs57879671	1.00[EUR][1000 genomes]
rs57935306	1.00[EUR][1000 genomes]
rs58272882	1.00[EUR][1000 genomes]
rs58306431	1.00[EUR][1000 genomes]
rs58511548	1.00[EUR][1000 genomes]
rs58532063	1.00[EUR][1000 genomes]
rs58554745	0.93[AFR][1000 genomes]
rs58886471	1.00[EUR][1000 genomes]
rs58907676	1.00[EUR][1000 genomes]
rs59816467	1.00[EUR][1000 genomes]
rs59960294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59983556	1.00[EUR][1000 genomes]
rs59989728	1.00[EUR][1000 genomes]
rs60221161	1.00[EUR][1000 genomes]
rs60664847	0.88[AFR][1000 genomes]
rs61128026	1.00[EUR][1000 genomes]
rs61196104	1.00[EUR][1000 genomes]
rs61466105	0.88[AFR][1000 genomes]
rs73236928	1.00[EUR][1000 genomes]
rs73236931	1.00[EUR][1000 genomes]
rs73236933	0.86[AFR][1000 genomes]
rs73236934	1.00[EUR][1000 genomes]
rs73236935	0.86[AFR][1000 genomes]
rs73236937	0.86[AFR][1000 genomes]
rs73236952	1.00[EUR][1000 genomes]
rs73236955	1.00[EUR][1000 genomes]
rs73236956	1.00[EUR][1000 genomes]
rs73236981	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73239013	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73239017	1.00[EUR][1000 genomes]
rs73239018	1.00[EUR][1000 genomes]
rs73239038	1.00[EUR][1000 genomes]
rs73239043	1.00[EUR][1000 genomes]
rs73239050	1.00[EUR][1000 genomes]
rs73239054	1.00[EUR][1000 genomes]
rs73239060	0.80[AFR][1000 genomes]
rs73239061	1.00[EUR][1000 genomes]
rs73239070	1.00[EUR][1000 genomes]
rs73239073	1.00[EUR][1000 genomes]
rs73253504	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv882771	chr5:118170135-118230640	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882772	chr5:118173127-118230640	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882773	chr5:118175640-118241854	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv599563	chr5:118191798-118241854	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv526318	chr5:118210835-118221589	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118216000-118224000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:118216600-118244800	Weak transcription	Primary T cells from cord blood	blood
3	chr5:118218800-118240600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:118219200-118227200	Weak transcription	Brain Anterior Caudate	brain
5	chr5:118219400-118227200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:118220000-118226800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links