Variant report

Variant	rs865865
Chromosome Location	chr7:102562082-102562083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102556325..102558865-chr7:102559053..102562636,3	K562	blood:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10241865	0.86[ASN][1000 genomes]
rs10242028	0.86[ASN][1000 genomes]
rs10250490	0.88[ASN][1000 genomes]
rs10257543	0.96[EUR][1000 genomes]
rs10271157	0.86[ASN][1000 genomes]
rs10273725	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10435335	0.92[EUR][1000 genomes]
rs10499952	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1100044	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1100046	0.91[ASN][1000 genomes]
rs11514917	0.83[ASN][1000 genomes]
rs11543736	0.92[EUR][1000 genomes]
rs11970869	0.96[EUR][1000 genomes]
rs11972019	0.96[EUR][1000 genomes]
rs11972644	0.96[EUR][1000 genomes]
rs11973870	0.93[EUR][1000 genomes]
rs11978670	0.96[EUR][1000 genomes]
rs11978768	0.96[EUR][1000 genomes]
rs11978799	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11980643	0.90[EUR][1000 genomes]
rs11983456	0.93[EUR][1000 genomes]
rs11983521	0.93[EUR][1000 genomes]
rs12056296	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12532495	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12533386	0.99[EUR][1000 genomes]
rs12537977	0.88[ASN][1000 genomes]
rs12540384	0.96[EUR][1000 genomes]
rs12666764	0.93[EUR][1000 genomes]
rs12667218	0.93[EUR][1000 genomes]
rs12668434	0.82[ASN][1000 genomes]
rs12671803	0.95[EUR][1000 genomes]
rs13233521	0.88[ASN][1000 genomes]
rs13242493	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17136090	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17136137	0.96[EUR][1000 genomes]
rs2009503	0.98[EUR][1000 genomes]
rs2159022	0.96[EUR][1000 genomes]
rs2190673	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2228686	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2411056	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2411059	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28856331	0.89[ASN][1000 genomes]
rs35479298	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3779029	0.93[EUR][1000 genomes]
rs41501847	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4296965	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4620204	0.88[ASN][1000 genomes]
rs56894117	0.93[EUR][1000 genomes]
rs56921864	0.96[EUR][1000 genomes]
rs57253646	0.80[EUR][1000 genomes]
rs57350619	0.93[EUR][1000 genomes]
rs57368671	0.95[EUR][1000 genomes]
rs57545514	0.96[EUR][1000 genomes]
rs57616389	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57776797	0.93[EUR][1000 genomes]
rs58191643	0.96[EUR][1000 genomes]
rs58680618	0.90[EUR][1000 genomes]
rs58814323	0.81[EUR][1000 genomes]
rs59278165	0.96[EUR][1000 genomes]
rs59544295	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59709436	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60524601	0.93[EUR][1000 genomes]
rs60599650	0.93[EUR][1000 genomes]
rs61679881	0.96[EUR][1000 genomes]
rs6465877	0.96[EUR][1000 genomes]
rs6465878	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6465879	0.95[EUR][1000 genomes]
rs6465880	0.86[ASN][1000 genomes]
rs6465882	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6465885	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6942855	0.96[EUR][1000 genomes]
rs6945369	0.93[EUR][1000 genomes]
rs6945997	0.81[AMR][1000 genomes]
rs6946773	0.80[EUR][1000 genomes]
rs6947403	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6949150	0.96[EUR][1000 genomes]
rs6951288	0.81[EUR][1000 genomes]
rs6953980	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6956781	0.96[EUR][1000 genomes]
rs6957434	0.96[EUR][1000 genomes]
rs6957771	0.99[EUR][1000 genomes]
rs6960428	0.88[ASN][1000 genomes]
rs6967389	0.93[EUR][1000 genomes]
rs6968713	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6975388	0.80[EUR][1000 genomes]
rs6975451	0.96[EUR][1000 genomes]
rs6976005	0.93[EUR][1000 genomes]
rs6977145	0.96[EUR][1000 genomes]
rs73406284	0.96[EUR][1000 genomes]
rs73406302	0.96[EUR][1000 genomes]
rs73408204	0.96[EUR][1000 genomes]
rs73408250	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7779145	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7779618	0.96[EUR][1000 genomes]
rs7780981	0.80[EUR][1000 genomes]
rs7794668	0.81[ASN][1000 genomes]
rs7796335	0.96[EUR][1000 genomes]
rs7804322	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs847646	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs847648	0.90[ASN][1000 genomes]
rs847649	0.92[ASN][1000 genomes]
rs847652	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs847656	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs847658	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9690210	0.92[EUR][1000 genomes]
rs9718453	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102517200-102578200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:102554800-102566200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:102555600-102566400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:102555600-102566600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:102558000-102566400	Weak transcription	HUVEC	blood vessel
6	chr7:102558000-102567200	Weak transcription	Fetal Kidney	kidney
7	chr7:102558200-102566400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:102558200-102567600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:102558400-102566400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:102558600-102566400	Weak transcription	Fetal Heart	heart
11	chr7:102559400-102566000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:102559400-102566600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:102559600-102566400	Weak transcription	Aorta	Aorta
14	chr7:102559600-102566400	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:102559600-102566400	Weak transcription	Osteobl	bone
16	chr7:102559600-102566600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:102559800-102565200	Weak transcription	Fetal Lung	lung
18	chr7:102559800-102565600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:102559800-102566400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:102559800-102566400	Weak transcription	NH-A	brain
21	chr7:102560000-102565800	Strong transcription	HSMM	muscle
22	chr7:102560600-102566400	Weak transcription	HSMMtube	muscle
23	chr7:102561000-102562600	Strong transcription	Fetal Stomach	stomach
24	chr7:102561400-102566400	Weak transcription	K562	blood
25	chr7:102562000-102565600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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