Variant report

Variant	rs866279
Chromosome Location	chr7:6451481-6451482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:6446943..6448782-chr7:6451434..6453838,3	K562	blood:
2	chr7:6449174..6451556-chr7:6462432..6464944,2	MCF-7	breast:
3	chr7:6450554..6452966-chr7:6454355..6457086,3	K562	blood:
4	chr7:6450208..6453839-chr7:6454159..6457397,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164535	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1075434	0.87[EUR][1000 genomes]
rs34215517	0.88[EUR][1000 genomes]
rs6463554	0.81[MEX][hapmap];0.87[TSI][hapmap]
rs73341292	0.90[EUR][1000 genomes]
rs73342949	0.92[EUR][1000 genomes]
rs73342964	0.85[EUR][1000 genomes]
rs73342968	0.86[EUR][1000 genomes]
rs7778220	0.91[EUR][1000 genomes]
rs7784465	0.81[MEX][hapmap];0.91[TSI][hapmap]
rs7806655	0.88[EUR][1000 genomes]
rs836475	0.83[CHD][hapmap]
rs836496	0.83[CHD][hapmap]
rs836501	0.83[CHD][hapmap]
rs836514	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs836517	0.93[ASN][1000 genomes]
rs836525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs836528	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs836535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs836542	0.93[ASN][1000 genomes]
rs836543	0.90[ASN][1000 genomes]
rs836544	0.93[ASN][1000 genomes]
rs929926	0.81[MEX][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv605999	chr7:6396719-6472881	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	esv1824738	chr7:6431933-6554222	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	esv1825865	chr7:6431933-6554222	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv606000	chr7:6446027-6477002	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv887428	chr7:6449496-6463905	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs866279	ZDHHC4	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6426000-6456400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:6426000-6475600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:6426400-6457400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:6437400-6457400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:6437400-6457400	Strong transcription	Dnd41	blood
6	chr7:6437600-6470400	Strong transcription	Fetal Brain Female	brain
7	chr7:6437800-6456400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:6437800-6457200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr7:6437800-6457400	Strong transcription	Primary B cells from peripheral blood	blood
10	chr7:6438000-6457400	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr7:6438000-6458000	Strong transcription	Osteobl	bone
12	chr7:6438000-6462400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:6438600-6457200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:6438600-6457400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr7:6438600-6475600	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:6438800-6457400	Strong transcription	Primary T cells from cord blood	blood
17	chr7:6438800-6457600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:6438800-6462800	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:6439000-6456400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:6439200-6456000	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:6439200-6456800	Strong transcription	NHDF-Ad	bronchial
22	chr7:6439200-6457200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:6439200-6457400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:6439400-6454200	Strong transcription	Spleen	Spleen
25	chr7:6439400-6457200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:6439400-6457400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr7:6439400-6457400	Strong transcription	Fetal Muscle Trunk	muscle
28	chr7:6439400-6458000	Strong transcription	Fetal Muscle Leg	muscle
29	chr7:6439600-6456000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:6439600-6456600	Strong transcription	HUVEC	blood vessel
31	chr7:6439600-6456800	Strong transcription	Aorta	Aorta
32	chr7:6439600-6457000	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr7:6439600-6457000	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr7:6439600-6457200	Strong transcription	Fetal Lung	lung
35	chr7:6439600-6457400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:6439600-6472400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr7:6439800-6454800	Strong transcription	Stomach Smooth Muscle	stomach
38	chr7:6439800-6457400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:6439800-6457400	Strong transcription	Liver	Liver
40	chr7:6439800-6457400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr7:6439800-6474600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:6439800-6474600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:6439800-6477400	Strong transcription	Fetal Intestine Small	intestine
44	chr7:6440200-6456200	Strong transcription	A549	lung
45	chr7:6440200-6456400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:6440200-6457400	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr7:6440200-6461400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:6440200-6464600	Weak transcription	Right Atrium	heart
49	chr7:6440400-6451800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:6440400-6457200	Strong transcription	Gastric	stomach

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