Variant report

Variant	rs867304
Chromosome Location	chr2:128078488-128078489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128077089..128079022-chr2:128080027..128081851,2	MCF-7	breast:
2	chr2:128038007..128040599-chr2:128076741..128078946,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10209678	0.86[ASN][1000 genomes]
rs10803585	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10928761	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11886231	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11890187	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901355	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12052483	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12463451	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12465955	0.89[ASN][1000 genomes]
rs12477214	0.93[ASN][1000 genomes]
rs12479003	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12622436	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12623948	0.87[ASN][1000 genomes]
rs12692064	0.86[ASN][1000 genomes]
rs12989081	0.93[ASN][1000 genomes]
rs12989154	0.96[ASN][1000 genomes]
rs12991062	0.87[ASN][1000 genomes]
rs12991768	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13029237	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1566823	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17015199	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850689	0.93[ASN][1000 genomes]
rs2090574	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2174270	0.89[ASN][1000 genomes]
rs2276583	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2896980	0.94[ASN][1000 genomes]
rs3088374	0.86[AMR][1000 genomes]
rs34832797	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35293119	0.94[ASN][1000 genomes]
rs35328149	0.87[ASN][1000 genomes]
rs3768866	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4150407	0.95[ASN][1000 genomes]
rs4150441	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4150454	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4150477	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4150495	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4150496	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4233583	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4233584	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4497825	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4662575	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4662578	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4662580	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4662711	0.84[ASN][1000 genomes]
rs4662717	0.90[ASN][1000 genomes]
rs4662722	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4662725	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55905117	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55998967	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58475809	0.87[ASN][1000 genomes]
rs59566504	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62157549	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62157555	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62160261	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6430935	0.88[ASN][1000 genomes]
rs6712213	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6712446	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6712551	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6731176	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6732279	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6761447	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71414745	0.81[ASN][1000 genomes]
rs7568261	0.96[ASN][1000 genomes]
rs7580658	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7587639	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7589451	0.95[ASN][1000 genomes]
rs9636237	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9789510	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3377291	chr2:128077236-128083877	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128058600-128085600	Strong transcription	Primary B cells from cord blood	blood
2	chr2:128059400-128082800	Strong transcription	Liver	Liver
3	chr2:128059400-128109600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:128059800-128093000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:128061600-128098200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr2:128061800-128096800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:128062000-128083200	Strong transcription	Primary T cells from cord blood	blood
8	chr2:128062000-128085000	Strong transcription	Duodenum Mucosa	Duodenum
9	chr2:128062000-128086600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:128062400-128094000	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr2:128062600-128083400	Strong transcription	Fetal Muscle Trunk	muscle
12	chr2:128062600-128083400	Strong transcription	Thymus	Thymus
13	chr2:128062600-128089400	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:128062800-128098000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr2:128063000-128080200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:128063000-128089200	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr2:128063200-128080200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:128063400-128084800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr2:128063400-128098400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:128063600-128081200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr2:128063600-128083400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr2:128063600-128091800	Strong transcription	Placenta	Placenta
23	chr2:128063800-128081400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr2:128063800-128083400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr2:128064200-128083800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr2:128064200-128090000	Weak transcription	Psoas Muscle	Psoas
27	chr2:128065000-128100200	Weak transcription	Stomach Mucosa	stomach
28	chr2:128066400-128090600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr2:128067400-128080000	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr2:128068200-128092200	Weak transcription	Pancreas	Pancrea
31	chr2:128069000-128117000	Weak transcription	Small Intestine	intestine
32	chr2:128069600-128079000	Strong transcription	HepG2	liver
33	chr2:128070200-128081400	Strong transcription	Left Ventricle	heart
34	chr2:128071200-128079400	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr2:128071200-128080000	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr2:128071600-128089000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr2:128072200-128090000	Weak transcription	Colonic Mucosa	Colon
38	chr2:128072200-128098200	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr2:128072200-128101400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr2:128072200-128109600	Weak transcription	Esophagus	oesophagus
41	chr2:128072200-128111800	Weak transcription	K562	blood
42	chr2:128072600-128112000	Weak transcription	NHEK	skin
43	chr2:128073000-128079000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr2:128073200-128088800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr2:128073600-128080000	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr2:128074000-128079600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
47	chr2:128074800-128106800	Weak transcription	Spleen	Spleen
48	chr2:128075000-128079200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr2:128075400-128078600	Weak transcription	Brain Hippocampus Middle	brain
50	chr2:128075600-128079200	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links