Variant report

Variant	rs868416
Chromosome Location	chr7:101469606-101469607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101468629..101471194-chr7:101478234..101481000,2	K562	blood:
2	chr7:101456865..101462678-chr7:101466062..101470276,9	MCF-7	breast:
3	chr7:101468558..101470418-chr7:101481796..101483360,2	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13232623	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35151674	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35353051	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3779056	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71559433	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv824243	chr7:101445202-101479651	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv521041	chr7:101458144-101496391	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101461200-101469800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr7:101461200-101471800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:101461200-101475200	Weak transcription	Esophagus	oesophagus
4	chr7:101461200-101475400	Weak transcription	Colonic Mucosa	Colon
5	chr7:101461200-101475400	Weak transcription	Gastric	stomach
6	chr7:101461200-101486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:101461400-101470600	Weak transcription	NHLF	lung
8	chr7:101461400-101471400	Weak transcription	Primary T cells from cord blood	blood
9	chr7:101461400-101473000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:101461600-101469800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:101461800-101477000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:101461800-101489200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:101462000-101470200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr7:101462000-101477000	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:101462200-101470200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr7:101462200-101472600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:101462200-101473200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:101462200-101482200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr7:101462200-101484200	Weak transcription	Fetal Kidney	kidney
20	chr7:101462400-101470400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:101462400-101474200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr7:101462600-101471400	Weak transcription	Osteobl	bone
23	chr7:101462800-101471800	Weak transcription	Primary B cells from cord blood	blood
24	chr7:101462800-101471800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:101463200-101471000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr7:101463800-101489800	Weak transcription	NHEK	skin
27	chr7:101464400-101472000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:101464400-101478400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:101464600-101488800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:101465800-101482000	Weak transcription	K562	blood
31	chr7:101466200-101470000	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr7:101466800-101470000	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr7:101466800-101470400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:101466800-101471200	Weak transcription	GM12878-XiMat	blood
35	chr7:101466800-101471600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr7:101466800-101482200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr7:101466800-101489800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr7:101466800-101498400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:101467000-101471400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr7:101467000-101471800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:101467000-101473000	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:101467000-101480200	Weak transcription	Aorta	Aorta
43	chr7:101467000-101480200	Weak transcription	Pancreas	Pancrea
44	chr7:101467000-101480600	Weak transcription	HSMM	muscle
45	chr7:101467000-101482000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr7:101467200-101470400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:101467200-101472400	Weak transcription	Hela-S3	cervix
48	chr7:101467200-101473200	Weak transcription	Adipose Nuclei	Adipose
49	chr7:101467200-101475400	Weak transcription	Stomach Mucosa	stomach
50	chr7:101467200-101477000	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links