Variant report

Variant	rs868498
Chromosome Location	chr14:56297430-56297431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10130664	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10139439	0.84[EUR][1000 genomes]
rs11623836	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1953360	0.88[EUR][1000 genomes]
rs1953362	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs1953363	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1959092	0.84[EUR][1000 genomes]
rs1959096	0.91[EUR][1000 genomes]
rs1959097	0.91[EUR][1000 genomes]
rs1959098	0.89[EUR][1000 genomes]
rs2184562	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2210781	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs2342593	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs2880397	0.89[EUR][1000 genomes]
rs4901603	0.89[EUR][1000 genomes]
rs6573062	0.88[EUR][1000 genomes]
rs6573064	0.89[EUR][1000 genomes]
rs7142470	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7143461	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7148208	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7149155	0.83[EUR][1000 genomes]
rs7150603	0.86[YRI][hapmap]
rs7155326	0.89[EUR][1000 genomes]
rs7156609	0.91[EUR][1000 genomes]
rs7157979	0.91[EUR][1000 genomes]
rs8004650	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs8008648	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs8019451	0.88[EUR][1000 genomes]
rs8022496	0.89[EUR][1000 genomes]
rs945275	0.89[EUR][1000 genomes]
rs9943970	0.84[EUR][1000 genomes]
rs9944128	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56294000-56301800	Enhancers	Stomach Mucosa	stomach
2	chr14:56296400-56298800	Weak transcription	Pancreas	Pancrea

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