Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211081640..211084626-chr1:211086454..211089760,4	K562	blood:
2	chr1:211081640..211084385-chr1:211086454..211088372,2	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10494931	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs10494932	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs11119658	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs11119664	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs11578692	0.82[ASN][1000 genomes]
rs11579078	0.82[ASN][1000 genomes]
rs11582507	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs11583101	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs12121565	0.82[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs12750762	0.82[ASN][1000 genomes]
rs12756697	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12760791	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs1393028	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs1501558	0.82[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs1501560	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17188741	0.82[ASN][1000 genomes]
rs17188748	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs17188797	0.92[JPT][hapmap]
rs2134108	0.80[ASN][1000 genomes]
rs2221250	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs33985151	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs34773128	0.80[ASN][1000 genomes]
rs34827659	0.82[ASN][1000 genomes]
rs4638187	0.82[ASN][1000 genomes]
rs6683856	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6697578	0.85[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6702598	0.82[ASN][1000 genomes]
rs7414286	0.82[ASN][1000 genomes]
rs9662051	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv549124	chr1:211069694-211088474	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211078800-211083800	Enhancers	HSMMtube	muscle
2	chr1:211080400-211085600	Enhancers	Liver	Liver
3	chr1:211080800-211083800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr1:211081200-211083800	Weak transcription	HSMM	muscle
5	chr1:211082000-211083200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:211082800-211085200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:211082800-211091000	Weak transcription	Brain Anterior Caudate	brain
8	chr1:211083000-211083200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:211083000-211084000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:211083000-211085200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:211083000-211089600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:211083000-211091000	Weak transcription	Brain Angular Gyrus	brain
13	chr1:211083000-211091000	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:211083000-211091200	Weak transcription	Brain Substantia Nigra	brain

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