Variant report

Variant	rs870741
Chromosome Location	chr4:125554113-125554114
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10026096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13434506	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13435256	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs17008483	0.87[ASN][1000 genomes]
rs17008497	0.87[ASN][1000 genomes]
rs2055274	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28446748	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28570281	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28593722	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28691726	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2893092	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3733472	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4410542	0.87[ASN][1000 genomes]
rs72925412	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72925417	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72925427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72925486	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72925494	0.87[ASN][1000 genomes]
rs72925502	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72927437	0.87[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125539000-125561200	Weak transcription	Ovary	ovary
2	chr4:125539200-125572400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:125540000-125590200	Weak transcription	Aorta	Aorta
4	chr4:125543600-125584200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:125545000-125572400	Weak transcription	Left Ventricle	heart
6	chr4:125547000-125571400	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:125552000-125554200	Enhancers	HUVEC	blood vessel
8	chr4:125552000-125555200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:125552200-125555200	Enhancers	Hela-S3	cervix
10	chr4:125552400-125555200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:125552400-125555400	Enhancers	NHEK	skin
12	chr4:125552400-125557000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:125552400-125558800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:125552800-125555200	Enhancers	HMEC	breast
15	chr4:125552800-125555400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:125553000-125555000	Enhancers	A549	lung
17	chr4:125553200-125554600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr4:125553200-125554800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:125553200-125555400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:125553200-125560200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:125553400-125554400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:125553400-125554600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:125553400-125556000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:125553400-125557400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:125553400-125557800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:125553400-125557800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:125553400-125561000	Weak transcription	NHLF	lung
28	chr4:125553400-125563000	Weak transcription	HSMM	muscle
29	chr4:125553400-125566000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:125553400-125590200	Weak transcription	HSMMtube	muscle
31	chr4:125553600-125554400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:125553600-125554800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr4:125553600-125556200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr4:125553600-125561000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr4:125553600-125561200	Weak transcription	NH-A	brain
36	chr4:125553600-125561200	Weak transcription	Osteobl	bone
37	chr4:125553600-125564000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr4:125553600-125587600	Weak transcription	Adipose Nuclei	Adipose
39	chr4:125553800-125554400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr4:125553800-125565800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:125554000-125558200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:125554000-125558600	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr4:125554000-125565800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr4:125554000-125572000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:125554000-125591600	Weak transcription	Placenta Amnion	Placenta Amnion

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