Variant report

Variant	rs871301
Chromosome Location	chr11:56156620-56156621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:56156453-56156716	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
OR5AL2P	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10791961	0.87[AFR][1000 genomes]
rs10896227	0.92[ASN][1000 genomes]
rs10896325	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896345	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227964	0.90[ASN][1000 genomes]
rs12277883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12786642	0.92[ASN][1000 genomes]
rs1573512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945228	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2128132	0.95[ASN][1000 genomes]
rs2220001	0.92[ASN][1000 genomes]
rs34434887	1.00[ASN][1000 genomes]
rs4420287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938829	0.92[ASN][1000 genomes]
rs4939033	0.86[ASN][1000 genomes]
rs4939037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939054	0.92[ASN][1000 genomes]
rs594113	0.96[ASN][1000 genomes]
rs594568	0.93[ASN][1000 genomes]
rs597016	0.86[ASN][1000 genomes]
rs597031	0.83[ASN][1000 genomes]
rs597045	0.86[ASN][1000 genomes]
rs597102	0.96[ASN][1000 genomes]
rs610822	0.96[ASN][1000 genomes]
rs612885	0.96[ASN][1000 genomes]
rs615231	0.96[ASN][1000 genomes]
rs621826	0.96[ASN][1000 genomes]
rs624412	0.96[ASN][1000 genomes]
rs634955	0.93[ASN][1000 genomes]
rs637202	0.96[ASN][1000 genomes]
rs639419	0.86[ASN][1000 genomes]
rs647027	0.96[ASN][1000 genomes]
rs647058	0.96[ASN][1000 genomes]
rs647402	0.93[ASN][1000 genomes]
rs652537	0.93[ASN][1000 genomes]
rs6591233	0.95[ASN][1000 genomes]
rs6591310	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660788	0.96[ASN][1000 genomes]
rs663964	0.93[ASN][1000 genomes]
rs669453	0.95[ASN][1000 genomes]
rs672711	0.96[ASN][1000 genomes]
rs675120	0.96[ASN][1000 genomes]
rs675991	0.96[ASN][1000 genomes]
rs680490	0.93[ASN][1000 genomes]
rs683539	0.96[ASN][1000 genomes]
rs7105808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116573	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126732	1.00[ASN][1000 genomes]
rs7131637	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7940239	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv832161	chr11:56046173-56166964	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv555096	chr11:56084444-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
5	nsv555097	chr11:56084611-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56156200-56157000	Enhancers	Pancreatic Islets	Pancreatic Islet

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