Variant report

Variant	rs871436
Chromosome Location	chr1:94198512-94198513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94146209..94148290-chr1:94198392..94201159,2	MCF-7	breast:
2	chr1:94145431..94147694-chr1:94198446..94200278,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10489605	0.93[GIH][hapmap]
rs1108527	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1108528	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164994	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12239830	0.82[CEU][hapmap]
rs1467129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17304770	0.82[CEU][hapmap];1.00[GIH][hapmap]
rs1877605	0.82[CEU][hapmap];0.95[YRI][hapmap]
rs4526623	0.83[GIH][hapmap];0.81[MEX][hapmap]
rs57870303	0.82[AMR][1000 genomes]
rs58410484	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61781046	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61781048	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61781049	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs61781051	0.97[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs61781053	0.80[ASN][1000 genomes]
rs61781054	0.94[AMR][1000 genomes]
rs61781055	0.94[AMR][1000 genomes]
rs61781056	0.94[AMR][1000 genomes]
rs61782398	0.82[AMR][1000 genomes]
rs61782399	0.82[AMR][1000 genomes]
rs6674149	0.94[AMR][1000 genomes]
rs72721074	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72723138	0.94[AMR][1000 genomes]
rs7523682	0.80[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94189000-94200000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:94190000-94199000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:94190400-94199000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:94190600-94200800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:94195400-94199200	Weak transcription	Brain Angular Gyrus	brain
6	chr1:94195800-94199000	Enhancers	Fetal Thymus	thymus
7	chr1:94196200-94200600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:94196200-94205800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:94196400-94198600	Enhancers	Ovary	ovary
10	chr1:94196600-94200000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:94196600-94204000	Weak transcription	Lung	lung
12	chr1:94197200-94199800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:94197400-94199000	Enhancers	Fetal Muscle Leg	muscle
14	chr1:94197400-94202000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:94197600-94198600	Enhancers	GM12878-XiMat	blood
16	chr1:94197600-94198800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr1:94197600-94200400	Weak transcription	HSMMtube	muscle
18	chr1:94197600-94200600	Weak transcription	Hela-S3	cervix
19	chr1:94197600-94201200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:94197600-94205800	Weak transcription	Spleen	Spleen
21	chr1:94197800-94198800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:94197800-94198800	Weak transcription	Adipose Nuclei	Adipose
23	chr1:94197800-94199000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:94197800-94199000	Weak transcription	HepG2	liver
25	chr1:94197800-94199000	Weak transcription	HSMM	muscle
26	chr1:94197800-94199400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr1:94197800-94199600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:94197800-94205800	Weak transcription	Right Atrium	heart
29	chr1:94198000-94198600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr1:94198000-94199800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:94198000-94200400	Weak transcription	HMEC	breast
32	chr1:94198000-94200600	Weak transcription	NHEK	skin
33	chr1:94198000-94200800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:94198000-94201200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:94198000-94202200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:94198200-94198600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr1:94198200-94198800	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr1:94198200-94199000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr1:94198200-94199400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr1:94198200-94199400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr1:94198200-94199400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:94198400-94199000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr1:94198400-94199000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr1:94198400-94199200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr1:94198400-94200600	Weak transcription	A549	lung
46	chr1:94198400-94200800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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