Variant report

Variant	rs872566
Chromosome Location	chr5:145088187-145088188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145088168..145091039-chr5:145092677..145095003,2	K562	blood:
2	chr5:145087405..145089668-chr5:145092865..145095003,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10035959	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10035998	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10038598	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10041421	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10045839	1.00[JPT][hapmap]
rs1019922	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1019923	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1019925	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1019926	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1025472	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10515560	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12518852	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13166750	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1347123	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347124	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368340	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368341	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1368343	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1432753	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1433028	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529708	0.98[ASN][1000 genomes]
rs1619551	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626062	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1626734	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1654133	0.89[EUR][1000 genomes]
rs1654134	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1654135	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1654143	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1654144	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1654145	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1654146	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1654147	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1654148	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1654150	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1654230	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1654231	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1654232	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1654233	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1654234	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1654235	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1654236	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1654237	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1654238	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1654239	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1654240	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1654242	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1654243	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103722	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1835931	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1897540	1.00[ASN][1000 genomes]
rs1962863	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1962864	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1972777	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1972778	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2014625	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2400196	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2400197	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2400198	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2400199	0.90[EUR][1000 genomes]
rs2436416	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3903516	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4521541	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55824632	0.83[ASN][1000 genomes]
rs6580383	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6580384	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6884968	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6896903	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7721955	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs872565	1.00[ASN][1000 genomes]
rs987806	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145089600	Weak transcription	Gastric	stomach
2	chr5:145068600-145106200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:145075400-145090200	Weak transcription	Aorta	Aorta
4	chr5:145076600-145088200	Weak transcription	Right Ventricle	heart
5	chr5:145077000-145091000	Weak transcription	Pancreas	Pancrea
6	chr5:145082000-145106200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:145086000-145090400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:145086600-145093400	Weak transcription	Stomach Smooth Muscle	stomach

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