Variant report

Variant	rs873761
Chromosome Location	chr8:129863533-129863534
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:129855829..129857601-chr8:129861654..129864302,2	MCF-7	breast:
2	chr8:129858879..129861538-chr8:129862120..129864287,2	MCF-7	breast:
3	chr8:129860905..129863737-chr8:129866151..129867802,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10956452	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1519850	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1914998	0.86[ASN][1000 genomes]
rs2395855	0.90[ASN][1000 genomes]
rs4568584	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4628229	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4733531	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6470666	0.90[ASN][1000 genomes]
rs6470670	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7010826	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7815713	0.96[EUR][1000 genomes]
rs7844704	0.97[EUR][1000 genomes]
rs873762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612220	chr8:129859924-129866274	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv517445	chr8:129859924-129881299	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129843800-129863600	Weak transcription	Dnd41	blood
2	chr8:129858600-129868800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129860000-129867000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:129861200-129867200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:129861800-129864600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:129862000-129864400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:129862000-129864400	Enhancers	NHDF-Ad	bronchial
8	chr8:129862200-129864000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:129862200-129864400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:129862400-129864200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:129862400-129864200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:129862400-129864400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:129862400-129864600	Enhancers	HSMM	muscle
14	chr8:129862600-129864000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:129862800-129864000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:129862800-129865600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:129862800-129866200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:129862800-129866600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr8:129863000-129866600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:129863200-129864000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:129863200-129866400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:129863200-129866800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:129863200-129866800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:129863400-129863600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:129863400-129864400	Enhancers	Osteobl	bone

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