Variant report

Variant	rs87603
Chromosome Location	chr11:35051239-35051240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35039461..35041795-chr11:35050641..35052600,2	K562	blood:
2	chr11:35021693..35023212-chr11:35050497..35053250,2	MCF-7	breast:
3	chr11:35039282..35042124-chr11:35049320..35051716,2	MCF-7	breast:
4	chr11:35050379..35055023-chr11:35058548..35063780,5	MCF-7	breast:
5	chr11:35050517..35052677-chr11:35065091..35067302,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11539202	1.00[YRI][hapmap]
rs592175	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35028600-35051600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:35037200-35051600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:35039800-35059200	Weak transcription	Pancreas	Pancrea
4	chr11:35049600-35054800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:35050400-35051400	Enhancers	Hela-S3	cervix
6	chr11:35050400-35051600	Enhancers	K562	blood
7	chr11:35050400-35051600	Enhancers	NHEK	skin
8	chr11:35050400-35051800	Enhancers	NHDF-Ad	bronchial
9	chr11:35050600-35051600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:35050600-35051600	Enhancers	GM12878-XiMat	blood
11	chr11:35050600-35051600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:35050600-35052000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr11:35050600-35052000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:35050600-35053200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:35050600-35053200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr11:35050600-35053400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr11:35050600-35054400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:35050800-35051400	Enhancers	A549	lung
19	chr11:35051000-35053200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:35051000-35053800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:35051000-35055400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:35051200-35051800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr11:35051200-35051800	Enhancers	HMEC	breast
24	chr11:35051200-35051800	Enhancers	NH-A	brain
25	chr11:35051200-35052000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr11:35051200-35052200	Enhancers	Primary B cells from cord blood	blood
27	chr11:35051200-35053000	Enhancers	Primary B cells from peripheral blood	blood
28	chr11:35051200-35053000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr11:35051200-35054200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:35051200-35055400	Enhancers	Primary T cells from cord blood	blood
31	chr11:35051200-35056000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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