Variant report

Variant	rs876462
Chromosome Location	chr2:37515880-37515881
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37514958..37517791-chr2:37524981..37527545,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10177176	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10182759	0.84[CEU][hapmap];0.80[JPT][hapmap]
rs10184179	0.96[CEU][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10190959	0.92[CEU][hapmap]
rs10209937	0.92[CEU][hapmap]
rs11124569	0.96[CEU][hapmap]
rs11124574	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1137437	0.92[CEU][hapmap]
rs11569755	0.89[JPT][hapmap]
rs1158218	0.92[CEU][hapmap]
rs1158219	0.92[CEU][hapmap]
rs11682607	0.82[EUR][1000 genomes]
rs11683872	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11693917	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11893943	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12618410	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs13018873	0.82[JPT][hapmap]
rs13022271	0.87[JPT][hapmap]
rs2041836	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs2287093	0.89[CEU][hapmap]
rs2888434	0.96[CEU][hapmap]
rs3213745	0.96[CEU][hapmap]
rs3755195	0.96[CEU][hapmap]
rs3770752	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs3770759	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3891003	1.00[JPT][hapmap]
rs4670667	0.87[JPT][hapmap]
rs4998429	0.96[CEU][hapmap]
rs6544062	0.80[JPT][hapmap]
rs6724820	0.87[JPT][hapmap]
rs6743782	0.85[CEU][hapmap]
rs74177070	0.86[EUR][1000 genomes]
rs7565331	0.82[JPT][hapmap]
rs9309004	0.92[CEU][hapmap];0.82[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs876462	CEBPZ	cis	Nerve Tibial	GTEx
rs876462	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs876462	CEBPZ	cis	Thyroid	GTEx
rs876462	CEBPZ	cis	Esophagus Mucosa	GTEx
rs876462	PRKD3	cis	lung	GTEx
rs876462	CEBPZ	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
2	chr2:37461200-37518800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
4	chr2:37470400-37521600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:37470800-37521400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:37479400-37520600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:37482800-37528600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
10	chr2:37487200-37528600	Weak transcription	Brain Substantia Nigra	brain
11	chr2:37487600-37521200	Weak transcription	Brain Angular Gyrus	brain
12	chr2:37490600-37521000	Strong transcription	Dnd41	blood
13	chr2:37499200-37520800	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr2:37499200-37521400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr2:37499200-37522200	Weak transcription	Spleen	Spleen
16	chr2:37499400-37522800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:37499400-37528600	Weak transcription	Brain Anterior Caudate	brain
18	chr2:37499400-37540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr2:37500200-37518600	Weak transcription	Fetal Stomach	stomach
20	chr2:37500200-37529800	Weak transcription	Fetal Intestine Small	intestine
21	chr2:37500200-37530200	Weak transcription	Gastric	stomach
22	chr2:37500400-37519200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr2:37500400-37520400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:37500600-37530200	Weak transcription	Thymus	Thymus
25	chr2:37502200-37528200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:37502200-37528600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:37502400-37516200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr2:37502600-37517800	Weak transcription	Colonic Mucosa	Colon
29	chr2:37502600-37520000	Weak transcription	Fetal Brain Female	brain
30	chr2:37502600-37521600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:37502600-37524600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr2:37502600-37528600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr2:37502600-37532600	Weak transcription	Small Intestine	intestine
34	chr2:37502600-37533000	Weak transcription	Psoas Muscle	Psoas
35	chr2:37502600-37535800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr2:37502800-37518400	Weak transcription	Ovary	ovary
37	chr2:37502800-37518600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr2:37502800-37528800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr2:37502800-37528800	Weak transcription	Brain Hippocampus Middle	brain
40	chr2:37502800-37533800	Weak transcription	Lung	lung
41	chr2:37502800-37543400	Weak transcription	Esophagus	oesophagus
42	chr2:37505000-37521000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr2:37505600-37520400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr2:37509000-37550800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr2:37509200-37516600	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr2:37509200-37516600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr2:37509600-37528600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr2:37509600-37539000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr2:37509800-37518600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr2:37510200-37526600	Weak transcription	K562	blood

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