Variant report

Variant	rs877597
Chromosome Location	chr18:29143814-29143815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29004154..29005000-chr18:29143490..29144004,2	K562	blood:
2	chr18:29003997..29005002-chr18:29143774..29144455,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10468828	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1551001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551002	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1551003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1551004	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667225	0.81[EUR][1000 genomes]
rs1667229	0.83[EUR][1000 genomes]
rs1667230	0.83[EUR][1000 genomes]
rs1667234	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1667235	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1791208	0.84[EUR][1000 genomes]
rs1791209	0.83[EUR][1000 genomes]
rs1791212	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1791215	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1791218	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1941931	0.80[EUR][1000 genomes]
rs4315413	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs4799575	0.97[EUR][1000 genomes]
rs875425	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs875426	0.82[EUR][1000 genomes]
rs9304102	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9951041	0.96[EUR][1000 genomes]
rs9963742	0.80[EUR][1000 genomes]
rs9963820	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs9963959	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv916545	chr18:28898800-29166364	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv833615	chr18:29008396-29192976	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv576635	chr18:29129931-29148814	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29136600-29145400	Weak transcription	Fetal Intestine Small	intestine
2	chr18:29142600-29145600	Enhancers	Liver	Liver
3	chr18:29143000-29144200	Weak transcription	Fetal Intestine Large	intestine
4	chr18:29143400-29146200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr18:29143800-29144200	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links