Variant report

Variant	rs878083
Chromosome Location	chr19:41897688-41897689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:41897485..41899650-chr19:41901503..41903323,2	K562	blood:
2	chr19:41892238..41893967-chr19:41895860..41898284,2	K562	blood:
3	chr19:41897198..41899417-chr19:41914370..41917141,2	MCF-7	breast:
4	chr19:41858094..41860444-chr19:41897665..41900146,2	K562	blood:
5	chr19:41888563..41890517-chr19:41896571..41898725,2	MCF-7	breast:
6	chr19:41895688..41899126-chr19:41900060..41902495,3	MCF-7	breast:
7	chr19:41858944..41861331-chr19:41896434..41899165,2	K562	blood:
8	chr19:41897165..41899650-chr19:41900933..41903323,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000105329	Chromatin interaction
ENSG00000142046	Chromatin interaction
ENSG00000077348	Chromatin interaction
ENSG00000248098	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10409485	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10413735	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10416743	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10417311	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10417997	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10420556	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10422783	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10422956	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10432268	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1043413	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1077856	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10853751	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11083618	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11083619	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11667848	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11667908	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11668924	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11670583	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11670668	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11670725	0.90[EUR][1000 genomes]
rs11670757	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11880539	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11883104	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12602	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12709849	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12980966	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12982607	0.81[ASN][1000 genomes]
rs13344547	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13344563	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13345590	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13346603	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1473248	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs166925	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16975238	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17318596	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17318666	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1967333	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1967334	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2231940	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2241706	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2241707	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2241708	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2241709	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2241710	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2241711	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2288871	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2304242	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2317131	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2569400	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2569754	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs284648	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs284649	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs284650	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs284651	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs284652	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs284654	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs284655	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs284656	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs284657	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs284658	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs284660	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284661	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284662	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs284663	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3213860	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3213861	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3745290	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3745292	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3786553	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3810174	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3810175	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3816037	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3826713	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4605279	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4674	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4802116	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4802117	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4802118	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4803461	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4803462	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4803463	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4803465	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4803467	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4803468	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4803469	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55986560	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58961854	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62117461	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62117462	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6508977	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7247332	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7255918	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7258973	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8103531	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8105450	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8105833	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878082	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892044	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9304593	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs878083	B3GNT8	cis	Nerve Tibial	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41883000-41902800	Weak transcription	Stomach Mucosa	stomach
2	chr19:41883200-41901400	Weak transcription	Fetal Brain Male	brain
3	chr19:41883200-41902600	Weak transcription	Right Atrium	heart
4	chr19:41883200-41902800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr19:41883200-41902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:41884600-41902400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr19:41886400-41902800	Weak transcription	NHDF-Ad	bronchial
8	chr19:41887000-41898200	Strong transcription	Fetal Muscle Leg	muscle
9	chr19:41887400-41899400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:41887600-41898200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr19:41887600-41901600	Strong transcription	Fetal Intestine Small	intestine
12	chr19:41887800-41898200	Strong transcription	Fetal Muscle Trunk	muscle
13	chr19:41887800-41901400	Strong transcription	Fetal Stomach	stomach
14	chr19:41888000-41898200	Strong transcription	Brain Cingulate Gyrus	brain
15	chr19:41888000-41899200	Strong transcription	A549	lung
16	chr19:41888000-41899400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr19:41888000-41900000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr19:41888000-41901200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr19:41888400-41898400	Strong transcription	Primary T cells from cord blood	blood
20	chr19:41888400-41898400	Strong transcription	Spleen	Spleen
21	chr19:41888600-41898800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr19:41889600-41898400	Strong transcription	Gastric	stomach
23	chr19:41889600-41899200	Strong transcription	Fetal Brain Female	brain
24	chr19:41889600-41899200	Strong transcription	Thymus	Thymus
25	chr19:41889600-41899800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr19:41890400-41898200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr19:41890400-41898200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr19:41891200-41898200	Strong transcription	Placenta	Placenta
29	chr19:41891200-41899200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr19:41891200-41899200	Strong transcription	Liver	Liver
31	chr19:41891200-41899800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr19:41891400-41900400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr19:41891800-41897800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr19:41891800-41898000	Strong transcription	Pancreas	Pancrea
35	chr19:41891800-41898200	Strong transcription	Brain Anterior Caudate	brain
36	chr19:41891800-41898200	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr19:41891800-41898400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr19:41891800-41898400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr19:41891800-41899000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr19:41891800-41899000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr19:41891800-41899200	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr19:41891800-41899200	Strong transcription	Dnd41	blood
43	chr19:41892000-41898200	Strong transcription	Adipose Nuclei	Adipose
44	chr19:41892000-41898200	Strong transcription	Fetal Intestine Large	intestine
45	chr19:41892000-41899200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr19:41892000-41899200	Strong transcription	Brain Germinal Matrix	brain
47	chr19:41892000-41900000	Strong transcription	Primary B cells from peripheral blood	blood
48	chr19:41892200-41898200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr19:41892200-41898200	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr19:41892200-41898800	Strong transcription	GM12878-XiMat	blood

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