Variant report

Variant	rs882203
Chromosome Location	chr9:15305967-15305968
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:15300090..15302521-chr9:15304681..15306725,2	MCF-7	breast:
2	chr9:15305088..15306661-chr9:15415103..15416933,2	MCF-7	breast:
3	chr9:15305128..15307154-chr9:15417021..15419951,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28444701	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4087078	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9657569	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2761505	chr9:15274373-15319613	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892624	chr9:15283761-15415461	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv613650	chr9:15296119-15378449	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv613651	chr9:15296355-15358157	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1015960	chr9:15296783-15380657	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv524849	chr9:15299590-15362057	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15290800-15306000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:15294400-15306200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:15297400-15306000	Weak transcription	HSMM	muscle
4	chr9:15297800-15306000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:15300400-15306000	Weak transcription	HUVEC	blood vessel
6	chr9:15301200-15306200	Weak transcription	Spleen	Spleen
7	chr9:15303600-15306000	Enhancers	Primary B cells from peripheral blood	blood
8	chr9:15304200-15307600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:15304600-15306200	Enhancers	Small Intestine	intestine
10	chr9:15304600-15306200	Enhancers	GM12878-XiMat	blood
11	chr9:15304800-15306200	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr9:15305000-15306200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr9:15305000-15307000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr9:15305200-15306000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr9:15305200-15306000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:15305200-15306000	Flanking Active TSS	HepG2	liver
17	chr9:15305200-15306200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:15305200-15306200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:15305200-15306200	Flanking Active TSS	Fetal Intestine Small	intestine
20	chr9:15305200-15306200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr9:15305200-15306600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr9:15305200-15306600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr9:15305200-15306800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:15305400-15306000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:15305400-15306200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr9:15305400-15306200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr9:15305400-15307600	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr9:15305600-15306000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr9:15305600-15306000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:15305600-15306000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr9:15305600-15306000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr9:15305600-15306000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr9:15305600-15306000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:15305600-15306000	Enhancers	Brain Substantia Nigra	brain
35	chr9:15305600-15306000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr9:15305600-15306000	Flanking Active TSS	Fetal Lung	lung
37	chr9:15305600-15306000	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
38	chr9:15305600-15306000	Enhancers	NH-A	brain
39	chr9:15305600-15306000	Flanking Active TSS	Osteobl	bone
40	chr9:15305600-15306200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr9:15305600-15306200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:15305600-15306200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:15305600-15306200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:15305600-15306200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr9:15305600-15306200	Flanking Active TSS	Colon Smooth Muscle	Colon
46	chr9:15305600-15306200	Flanking Active TSS	Duodenum Mucosa	Duodenum
47	chr9:15305600-15306200	Enhancers	Left Ventricle	heart
48	chr9:15305600-15306200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr9:15305600-15306400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr9:15305600-15306400	Flanking Active TSS	Liver	Liver

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