Variant report

Variant	rs886797
Chromosome Location	chr7:105473397-105473398
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105471516..105474316-chr7:105479305..105481935,2	MCF-7	breast:
2	chr7:105463470..105465747-chr7:105472963..105475389,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10229491	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2108324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212414	1.00[CHB][hapmap]
rs212415	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4727628	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740309	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
2	chr7:105449000-105479200	Weak transcription	Esophagus	oesophagus
3	chr7:105457200-105478000	Weak transcription	Brain Anterior Caudate	brain
4	chr7:105465400-105506600	Weak transcription	Fetal Intestine Large	intestine
5	chr7:105466200-105473600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:105468200-105478200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr7:105468400-105473600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:105468400-105478800	Weak transcription	Fetal Intestine Small	intestine
9	chr7:105469000-105479200	Weak transcription	Right Atrium	heart
10	chr7:105469800-105473800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:105470000-105473400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:105470000-105473600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:105470000-105473800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:105470200-105473800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:105470400-105473800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:105470600-105473400	Enhancers	Colon Smooth Muscle	Colon
17	chr7:105470800-105473600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr7:105471400-105473400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:105471400-105473600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:105471400-105473800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:105471400-105475000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:105471400-105476400	Weak transcription	Brain Germinal Matrix	brain
23	chr7:105471400-105477400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:105471600-105473400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:105471600-105476800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr7:105471600-105478000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:105471600-105478000	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:105471600-105478000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:105471600-105479200	Weak transcription	Fetal Thymus	thymus
30	chr7:105471600-105479800	Weak transcription	Gastric	stomach
31	chr7:105471800-105473400	Enhancers	Hela-S3	cervix
32	chr7:105471800-105473800	Enhancers	A549	lung
33	chr7:105471800-105475200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:105471800-105476000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:105471800-105476000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:105471800-105476400	Weak transcription	Fetal Brain Female	brain
37	chr7:105471800-105478000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr7:105471800-105478000	Weak transcription	Lung	lung
39	chr7:105471800-105478000	Weak transcription	Right Ventricle	heart
40	chr7:105471800-105478000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr7:105471800-105478800	Weak transcription	Ovary	ovary
42	chr7:105471800-105483600	Weak transcription	Pancreas	Pancrea
43	chr7:105471800-105484000	Weak transcription	Primary T cells from cord blood	blood
44	chr7:105472000-105475800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr7:105472000-105478200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:105472200-105475000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:105472200-105476000	Weak transcription	HepG2	liver
48	chr7:105472200-105478600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr7:105472400-105473800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:105472400-105477800	Weak transcription	Adipose Nuclei	Adipose

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