Variant report

Variant	rs887341
Chromosome Location	chr10:119129455-119129456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:119129127..119131284-chr10:119133057..119134797,2	MCF-7	breast:
2	chr10:119127761..119129710-chr10:119132115..119136204,5	MCF-7	breast:
3	chr10:119124177..119125697-chr10:119127748..119130278,2	K562	blood:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10082478	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1008448	0.80[JPT][hapmap]
rs10787767	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10787768	0.83[AMR][1000 genomes]
rs10787769	0.86[AMR][1000 genomes]
rs10787771	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10886058	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10886061	0.84[ASN][1000 genomes]
rs10886062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10886064	0.84[ASN][1000 genomes]
rs10886065	0.82[ASN][1000 genomes]
rs11197957	0.83[AMR][1000 genomes]
rs11197960	0.84[ASN][1000 genomes]
rs11197961	0.86[AMR][1000 genomes]
rs11197968	0.89[CEU][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11197969	0.89[CEU][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11197970	0.84[ASN][1000 genomes]
rs11197974	0.84[ASN][1000 genomes]
rs11197975	0.83[ASN][1000 genomes]
rs11197976	0.83[ASN][1000 genomes]
rs11197977	0.81[ASN][1000 genomes]
rs11197981	0.89[CEU][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs12243133	0.81[ASN][1000 genomes]
rs12243628	0.84[ASN][1000 genomes]
rs12244411	0.86[JPT][hapmap];0.80[YRI][hapmap]
rs12249877	0.86[AMR][1000 genomes]
rs12256994	0.81[ASN][1000 genomes]
rs12263512	0.80[CEU][hapmap];0.84[ASN][1000 genomes]
rs12265713	0.88[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12269460	0.84[ASN][1000 genomes]
rs12413507	0.89[CEU][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs12414644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12569963	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12571779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12573009	0.80[CEU][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs12573252	0.86[AMR][1000 genomes]
rs1468563	0.84[ASN][1000 genomes]
rs1860407	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935166	0.85[ASN][1000 genomes]
rs1935167	0.87[CEU][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1954212	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2153714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2244249	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2255321	0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2255367	0.89[CEU][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2275670	0.83[ASN][1000 genomes]
rs2420457	0.83[ASN][1000 genomes]
rs2429505	0.89[CEU][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2490631	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2532782	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2532783	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532784	0.89[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2532785	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532786	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2532789	0.83[ASN][1000 genomes]
rs2532792	0.83[ASN][1000 genomes]
rs2532793	0.83[ASN][1000 genomes]
rs2532795	0.89[CEU][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs2532796	0.89[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2532809	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532817	0.83[JPT][hapmap]
rs2532836	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2532838	0.89[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2532839	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532840	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2532842	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2532844	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2794416	0.83[ASN][1000 genomes]
rs2794436	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2803799	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2803801	0.86[JPT][hapmap]
rs2803804	0.89[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2803807	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2803810	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2803816	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2901123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34247425	0.85[ASN][1000 genomes]
rs363227	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs363228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs363229	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs363235	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs363236	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs363238	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs363242	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs363243	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs363271	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs363272	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs363275	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs363276	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs363278	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs363282	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs363303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3814229	0.84[ASN][1000 genomes]
rs3814230	0.89[CEU][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4751621	0.83[AMR][1000 genomes]
rs4751622	0.83[AMR][1000 genomes]
rs4751623	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs4752048	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4752051	0.90[JPT][hapmap];0.83[AMR][1000 genomes]
rs4752052	0.83[AMR][1000 genomes]
rs4752054	0.83[ASN][1000 genomes]
rs4752056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6585431	0.89[CEU][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7070594	0.89[CEU][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7072027	0.89[CEU][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7072785	0.85[ASN][1000 genomes]
rs7086651	0.89[CEU][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7088401	0.85[ASN][1000 genomes]
rs7090219	0.86[AMR][1000 genomes]
rs72825515	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72825530	0.83[ASN][1000 genomes]
rs7897828	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs7898092	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs7901203	0.84[ASN][1000 genomes]
rs979992	0.89[CEU][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs887341	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
3	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:119109400-119130000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:119112600-119132800	Weak transcription	Gastric	stomach
6	chr10:119120000-119130800	Weak transcription	Brain Anterior Caudate	brain
7	chr10:119120000-119132200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:119121400-119130000	Enhancers	Fetal Intestine Large	intestine
9	chr10:119121600-119130600	Enhancers	HepG2	liver
10	chr10:119122400-119130000	Enhancers	Fetal Intestine Small	intestine
11	chr10:119123600-119130400	Weak transcription	Brain Substantia Nigra	brain
12	chr10:119123800-119131000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:119123800-119131000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:119123800-119131600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:119124000-119132000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:119124200-119130000	Weak transcription	Adipose Nuclei	Adipose
17	chr10:119124200-119131000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:119124200-119131000	Weak transcription	Small Intestine	intestine
19	chr10:119124200-119131600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:119124400-119129800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:119124400-119130000	Weak transcription	Fetal Heart	heart
22	chr10:119124400-119130800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:119124400-119130800	Enhancers	Liver	Liver
24	chr10:119124400-119130800	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:119124400-119130800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:119124400-119130800	Weak transcription	Spleen	Spleen
27	chr10:119124400-119131000	Weak transcription	NHLF	lung
28	chr10:119124400-119131200	Weak transcription	Colonic Mucosa	Colon
29	chr10:119124400-119131400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:119124400-119132000	Weak transcription	Right Ventricle	heart
31	chr10:119124600-119130600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:119124600-119131400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:119124800-119130800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr10:119124800-119131800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:119125000-119130400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr10:119125200-119131600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr10:119125400-119130000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr10:119125400-119131400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr10:119125800-119130400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr10:119125800-119131000	Weak transcription	NH-A	brain
41	chr10:119126200-119131000	Weak transcription	Right Atrium	heart
42	chr10:119126200-119131000	Weak transcription	HUVEC	blood vessel
43	chr10:119126400-119131400	Weak transcription	Fetal Kidney	kidney
44	chr10:119126600-119130000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:119126600-119130400	Weak transcription	Fetal Lung	lung
46	chr10:119126600-119131400	Weak transcription	Primary T cells from cord blood	blood
47	chr10:119126600-119131400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:119126800-119130800	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:119126800-119132800	Weak transcription	Lung	lung
50	chr10:119127000-119130000	Weak transcription	Fetal Stomach	stomach

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