Variant report

Variant	rs887780
Chromosome Location	chr6:139742788-139742789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1019237	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2005734	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2908495	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2908496	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs2908510	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3010312	0.89[CEU][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3010316	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3095426	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6921901	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519810	chr6:139742788-139743807	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs887780	AHI1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139741000-139743400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:139741000-139743400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:139741200-139743000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:139741200-139743200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:139741200-139743400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:139741800-139743600	Enhancers	Ovary	ovary
7	chr6:139742200-139742800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:139742400-139743000	Enhancers	K562	blood
9	chr6:139742400-139743200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:139742400-139743400	Weak transcription	Pancreas	Pancrea
11	chr6:139742400-139744000	Enhancers	Left Ventricle	heart
12	chr6:139742400-139745600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:139742600-139743000	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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