Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1110512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110125	0.94[ASN][1000 genomes]
rs12110310	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1448479	1.00[JPT][hapmap]
rs1559072	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17144517	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17144520	0.97[AFR][1000 genomes]
rs17144523	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17144526	0.97[AFR][1000 genomes]
rs17144529	0.80[AFR][1000 genomes]
rs17144550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17144551	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17144552	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17144554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144584	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835048	0.90[ASN][1000 genomes]
rs34694285	0.94[ASN][1000 genomes]
rs58999502	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs721065	0.90[ASN][1000 genomes]
rs73249197	0.95[AFR][1000 genomes]
rs73789377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7710339	1.00[JPT][hapmap]
rs7719304	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs888711	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118085400-118088200	Weak transcription	Fetal Lung	lung

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