The 2.0 version of rSNPBase

Variant report

Variant rs893342
Chromosome Location chr2:11904486-11904487
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11888400-11916400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr2:11890400-11906400 Weak transcription Fetal Brain Male brain
3 chr2:11890600-11905800 Weak transcription Placenta Amnion Placenta Amnion
4 chr2:11893800-11906400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr2:11894600-11904600 Weak transcription Fetal Intestine Small intestine
6 chr2:11895000-11904600 Weak transcription Muscle Satellite Cultured Cells --
7 chr2:11895000-11904600 Weak transcription Rectal Smooth Muscle rectum
8 chr2:11895000-11904600 Weak transcription Hela-S3 cervix
9 chr2:11895000-11905000 Weak transcription Gastric stomach
10 chr2:11895000-11905400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr2:11895000-11905800 Weak transcription Brain Angular Gyrus brain
12 chr2:11895000-11905800 Weak transcription HSMMtube muscle
13 chr2:11895000-11905800 Weak transcription NH-A brain
14 chr2:11895000-11905800 Weak transcription Osteobl bone
15 chr2:11895000-11906000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr2:11895000-11906200 Weak transcription HSMM muscle
17 chr2:11895000-11907000 Weak transcription Colon Smooth Muscle Colon
18 chr2:11895000-11918200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr2:11895600-11905600 Weak transcription Duodenum Mucosa Duodenum
20 chr2:11895800-11904600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr2:11895800-11905600 Weak transcription NHDF-Ad bronchial
22 chr2:11895800-11905800 Weak transcription Spleen Spleen
23 chr2:11897400-11905600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr2:11897600-11909000 Weak transcription Psoas Muscle Psoas
25 chr2:11897800-11905000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr2:11898200-11905000 Weak transcription GM12878-XiMat blood
27 chr2:11898600-11906000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr2:11899200-11905200 Weak transcription Thymus Thymus
29 chr2:11899200-11905400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr2:11899200-11906000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
31 chr2:11899200-11911200 Weak transcription Small Intestine intestine
32 chr2:11899400-11905600 Weak transcription Placenta Placenta
33 chr2:11900600-11908800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr2:11900600-11918000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr2:11900800-11905200 Enhancers Rectal Mucosa Donor 31 rectum
36 chr2:11900800-11912200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr2:11901000-11905000 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr2:11901000-11905400 Weak transcription Brain Germinal Matrix brain
39 chr2:11901000-11905400 Enhancers Skeletal Muscle Female skeletal muscle
40 chr2:11901200-11904600 Weak transcription Fetal Brain Female brain
41 chr2:11901200-11909000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr2:11901200-11915000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr2:11901400-11905600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr2:11901600-11905800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
45 chr2:11901600-11914200 Weak transcription iPS-18 Cell Line embryonic stem cell
46 chr2:11901800-11904800 Weak transcription A549 lung
47 chr2:11901800-11914000 Strong transcription Primary T regulatory cells fromperipheralblood blood
48 chr2:11901800-11918600 Strong transcription Fetal Adrenal Gland Adrenal Gland
49 chr2:11902000-11905400 Enhancers Fetal Heart heart
50 chr2:11902000-11905800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood

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Last update: Aug 31, 2015