Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10019700	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10025303	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1036578	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13434973	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1371932	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1371933	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1371934	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1440739	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1440740	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1440741	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17088773	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2165365	0.81[ASN][1000 genomes]
rs4429773	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4860265	0.81[ASN][1000 genomes]
rs4860863	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4860865	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6552129	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6813358	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7677492	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7686965	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs960994	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879214	chr4:68389841-68789778	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv829960	chr4:68649237-68809629	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1007376	chr4:68693483-69008202	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv1811886	chr4:68725776-68780041	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv879219	chr4:68743032-69028913	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:68741200-68751400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:68741400-68751800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:68741400-68752800	Weak transcription	Esophagus	oesophagus
4	chr4:68744800-68752800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr4:68746000-68748800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:68746600-68749600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:68747200-68750200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:68747200-68751600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:68747600-68751200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr4:68747600-68751600	Weak transcription	NHLF	lung
11	chr4:68747800-68750000	Weak transcription	NHDF-Ad	bronchial
12	chr4:68747800-68750200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:68747800-68750200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:68747800-68751600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:68747800-68751600	Weak transcription	HSMMtube	muscle
16	chr4:68748200-68748800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:68748200-68751400	Weak transcription	HSMM	muscle
18	chr4:68748400-68749600	Weak transcription	NHEK	skin

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