Variant report

Variant	rs898412
Chromosome Location	chr3:53651518-53651519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17053285	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17053295	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2292918	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2612020	0.93[ASN][1000 genomes]
rs2633708	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2633709	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2680657	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2680659	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs36003262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774459	1.00[EUR][1000 genomes]
rs3774467	0.84[CHB][hapmap]
rs3774483	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs3774484	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774485	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774487	1.00[JPT][hapmap]
rs3774490	1.00[JPT][hapmap]
rs3774499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774503	1.00[JPT][hapmap]
rs3774513	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774521	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3774524	0.84[ASN][1000 genomes]
rs55999888	0.95[ASN][1000 genomes]
rs6788419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs715781	1.00[EUR][1000 genomes]
rs72967859	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72978531	0.93[ASN][1000 genomes]
rs73840122	1.00[EUR][1000 genomes]
rs898413	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311511	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9848595	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53648800-53651600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:53650000-53652000	Enhancers	Fetal Lung	lung
3	chr3:53650200-53653200	Strong transcription	Fetal Intestine Small	intestine
4	chr3:53650800-53651800	Enhancers	Brain Angular Gyrus	brain
5	chr3:53650800-53653200	Enhancers	Colonic Mucosa	Colon
6	chr3:53650800-53653600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr3:53651000-53651800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:53651000-53652000	Enhancers	Lung	lung
9	chr3:53651200-53652400	Enhancers	Brain Hippocampus Middle	brain
10	chr3:53651200-53653600	Weak transcription	Fetal Intestine Large	intestine
11	chr3:53651200-53653600	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr3:53651200-53653600	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr3:53651400-53652800	Enhancers	Duodenum Mucosa	Duodenum

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