Variant report

Variant	rs899674
Chromosome Location	chr8:63740190-63740191
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10095936	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10216382	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10957250	0.81[ASN][1000 genomes]
rs11779748	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12679603	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13249030	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13274287	0.88[ASN][1000 genomes]
rs1350055	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1350056	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1480113	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1552053	0.81[AMR][1000 genomes]
rs2168318	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2352236	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28516791	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35448187	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4302833	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4307337	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4332128	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4554461	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6472055	0.84[EUR][1000 genomes]
rs6984039	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7018000	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7018025	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7018340	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7462712	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7826606	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7830715	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7836848	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7842329	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs899680	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9720970	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs979262	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv521804	chr8:63705238-63758070	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv890961	chr8:63708519-63773787	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv890962	chr8:63708519-63812686	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63737400-63742000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:63739000-63740200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:63740000-63741200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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