Variant report

Variant	rs903520
Chromosome Location	chr3:23274476-23274477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23247004..23248744-chr3:23272999..23274643,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11707094	0.85[ASN][1000 genomes]
rs11707450	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11708040	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11712500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11712582	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11713392	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715035	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342980	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17401836	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17402378	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874234	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1874502	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1874503	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1994953	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2055156	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2055157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2101811	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2132144	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2132146	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2132148	1.00[ASN][1000 genomes]
rs2201484	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2359754	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35194124	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35613382	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4334589	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4858063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858068	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4858070	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4858487	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4858489	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4858490	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4858495	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4858499	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4858507	0.82[ASN][1000 genomes]
rs5023615	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59185768	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252657	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255292	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62255293	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6762546	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6765758	0.82[ASN][1000 genomes]
rs6774214	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6790327	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7621680	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7653868	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs923996	0.95[ASN][1000 genomes]
rs9815299	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9823684	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9836135	0.91[ASN][1000 genomes]
rs9840808	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9841336	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9848389	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9849679	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9863465	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9875910	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23261400-23278200	Weak transcription	Brain Angular Gyrus	brain
2	chr3:23265400-23282000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:23266200-23277800	Weak transcription	Fetal Thymus	thymus
4	chr3:23270600-23278200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:23270600-23278400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:23271200-23276800	Weak transcription	Psoas Muscle	Psoas
7	chr3:23271200-23278200	Weak transcription	Right Ventricle	heart
8	chr3:23272600-23283000	Weak transcription	HMEC	breast
9	chr3:23273000-23274800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:23273000-23274800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr3:23273200-23274600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:23273200-23274800	Enhancers	HSMMtube	muscle
13	chr3:23273400-23274800	Enhancers	Aorta	Aorta
14	chr3:23273400-23274800	Enhancers	Brain Hippocampus Middle	brain
15	chr3:23273400-23274800	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr3:23273400-23274800	Enhancers	Rectal Smooth Muscle	rectum
17	chr3:23273600-23274800	Enhancers	Gastric	stomach
18	chr3:23273600-23277800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:23273800-23274600	Weak transcription	Right Atrium	heart
20	chr3:23274200-23274600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr3:23274200-23274800	Enhancers	Brain Substantia Nigra	brain
22	chr3:23274200-23275000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr3:23274400-23274600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr3:23274400-23274600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:23274400-23274600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr3:23274400-23274600	Enhancers	Esophagus	oesophagus
27	chr3:23274400-23274600	Enhancers	Left Ventricle	heart
28	chr3:23274400-23274600	Enhancers	Ovary	ovary
29	chr3:23274400-23274600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr3:23274400-23274800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr3:23274400-23274800	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr3:23274400-23274800	Enhancers	Primary B cells from peripheral blood	blood
33	chr3:23274400-23274800	Enhancers	Fetal Heart	heart
34	chr3:23274400-23275000	Enhancers	Brain Cingulate Gyrus	brain
35	chr3:23274400-23275200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:23274400-23280800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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