Variant report

Variant	rs904271
Chromosome Location	chr1:61473348-61473349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61440825..61442861-chr1:61471993..61474071,2	K562	blood:
2	chr1:61471541..61473725-chr1:61514267..61515959,2	K562	blood:
3	chr1:61472293..61476922-chr1:61520957..61524136,5	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11207692	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs12130085	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs12404093	1.00[JPT][hapmap]
rs1573249	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17121533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17376392	1.00[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4915584	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4915585	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4915725	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4915726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs924274	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs904271	FAM49A	trans	lymphoblastoid	seeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61458200-61477600	Weak transcription	Left Ventricle	heart
2	chr1:61466600-61478800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:61470000-61474200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:61470200-61473400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:61470600-61474000	Enhancers	Brain Cingulate Gyrus	brain
6	chr1:61472000-61473600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:61472000-61473800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:61472000-61479000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:61472200-61473400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:61472200-61473600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:61472200-61474000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:61472200-61474200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:61472200-61474600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:61472200-61475200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:61472200-61476800	Weak transcription	Brain Anterior Caudate	brain
16	chr1:61472200-61476800	Weak transcription	Fetal Brain Male	brain
17	chr1:61472200-61476800	Weak transcription	Fetal Heart	heart
18	chr1:61472200-61477400	Weak transcription	Brain Angular Gyrus	brain
19	chr1:61472400-61473600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr1:61472400-61477600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:61472400-61477600	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:61472400-61477800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:61472400-61479000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:61472600-61473600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr1:61472600-61474000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr1:61472600-61477400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr1:61472600-61477800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:61472600-61477800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:61472800-61473800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:61472800-61476800	Weak transcription	Fetal Brain Female	brain
31	chr1:61473000-61473600	Enhancers	Brain Hippocampus Middle	brain
32	chr1:61473200-61473400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr1:61473200-61473400	Enhancers	K562	blood
34	chr1:61473200-61473600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:61473200-61473600	Enhancers	Brain Substantia Nigra	brain
36	chr1:61473200-61474000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:61473200-61476200	Enhancers	Brain Germinal Matrix	brain

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