Variant report

Variant	rs906798
Chromosome Location	chr9:15712095-15712096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12685082	0.85[AFR][1000 genomes]
rs1396705	0.81[ASN][1000 genomes]
rs16933504	0.90[ASN][1000 genomes]
rs16933593	0.92[AFR][1000 genomes]
rs16933603	0.92[AFR][1000 genomes]
rs16933626	0.92[AFR][1000 genomes]
rs2066291	0.87[AFR][1000 genomes]
rs34816651	0.97[AFR][1000 genomes]
rs60572069	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6474950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6474968	0.92[AFR][1000 genomes]
rs7021778	0.88[AFR][1000 genomes]
rs7025415	0.90[AFR][1000 genomes]
rs7026629	0.90[AFR][1000 genomes]
rs7032595	0.85[ASN][1000 genomes]
rs7035048	0.93[AFR][1000 genomes]
rs7048479	0.87[AFR][1000 genomes]
rs73410253	0.85[AFR][1000 genomes]
rs73410254	0.85[AFR][1000 genomes]
rs73410286	0.88[AFR][1000 genomes]
rs73416209	0.98[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73416213	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73416233	0.97[AFR][1000 genomes]
rs73416254	0.93[AFR][1000 genomes]
rs73416267	0.95[AFR][1000 genomes]
rs73416285	0.93[AFR][1000 genomes]
rs73418137	0.92[AFR][1000 genomes]
rs7846818	0.81[AFR][1000 genomes]
rs7847946	0.92[AFR][1000 genomes]
rs7856304	0.87[AFR][1000 genomes]
rs7860283	0.88[AFR][1000 genomes]
rs7861533	0.84[AFR][1000 genomes]
rs7865705	0.92[AFR][1000 genomes]
rs7867521	0.85[AFR][1000 genomes]
rs7869609	0.90[AFR][1000 genomes]
rs7870166	0.95[AFR][1000 genomes]
rs7873842	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7875957	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15669000-15720800	Weak transcription	Gastric	stomach
2	chr9:15676600-15725000	Weak transcription	Pancreas	Pancrea
3	chr9:15679800-15746800	Weak transcription	Ovary	ovary
4	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
5	chr9:15690400-15721800	Weak transcription	Fetal Lung	lung
6	chr9:15691800-15717000	Weak transcription	Thymus	Thymus
7	chr9:15699600-15717400	Weak transcription	Fetal Stomach	stomach
8	chr9:15699600-15728200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:15704000-15716600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:15704600-15719800	Weak transcription	Right Ventricle	heart
11	chr9:15706600-15712200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:15708600-15712600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:15711600-15712600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:15711800-15712400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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