Variant report

Variant	rs908733
Chromosome Location	chr2:181969931-181969932
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181969275..181969953-chr2:182330780..182331934,4	MCF-7	breast:
2	chr2:181968911..181970241-chr2:182330712..182332033,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10183291	0.80[CEU][hapmap]
rs10207300	0.83[CEU][hapmap]
rs10432490	0.84[CEU][hapmap]
rs10803945	0.84[CEU][hapmap]
rs10930949	0.84[CEU][hapmap]
rs10930951	0.84[CEU][hapmap]
rs12475075	0.84[CEU][hapmap]
rs12477135	0.84[CEU][hapmap]
rs12613470	0.80[CEU][hapmap]
rs12614444	0.84[CEU][hapmap]
rs13010713	0.81[ASN][1000 genomes]
rs1543177	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1949453	0.82[CHB][hapmap]
rs4508560	0.82[CHB][hapmap]
rs4638755	0.80[CEU][hapmap]
rs6433894	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6729509	0.82[CHB][hapmap]
rs6731186	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7588217	0.87[EUR][1000 genomes]
rs873256	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181967800-181970800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:181969000-181972400	Enhancers	Dnd41	blood
3	chr2:181969000-181974600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:181969200-181970400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:181969200-181970800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr2:181969200-181972000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:181969200-181972400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:181969200-181972600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr2:181969200-181973200	Enhancers	Primary T cells from cord blood	blood
10	chr2:181969200-181973200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr2:181969200-181973600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr2:181969200-181974200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:181969400-181970000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr2:181969400-181971800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr2:181969400-181972400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr2:181969400-181972600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:181969400-181972600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:181969400-181972600	Enhancers	HSMMtube	muscle
19	chr2:181969400-181972800	Enhancers	Fetal Brain Male	brain
20	chr2:181969400-181973400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr2:181969400-181974000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr2:181969400-181974200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr2:181969600-181970000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:181969600-181970000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:181969600-181970000	Enhancers	Primary hematopoietic stem cells	blood
26	chr2:181969600-181970400	Weak transcription	A549	lung
27	chr2:181969600-181971000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr2:181969600-181971000	Enhancers	GM12878-XiMat	blood
29	chr2:181969600-181971800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr2:181969600-181971800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr2:181969600-181972400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr2:181969600-181972400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:181969600-181972400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr2:181969600-181972400	Enhancers	Osteobl	bone
35	chr2:181969600-181973200	Enhancers	NHDF-Ad	bronchial
36	chr2:181969800-181970400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr2:181969800-181970800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr2:181969800-181970800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr2:181969800-181971000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:181969800-181971000	Weak transcription	Thymus	Thymus
41	chr2:181969800-181972400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr2:181969800-181972400	Enhancers	HSMM	muscle

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