Variant report

Variant	rs909060
Chromosome Location	chr7:47930433-47930434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11972142	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11975405	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11978282	1.00[MEX][hapmap]
rs11981984	1.00[MEX][hapmap]
rs17131909	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17131928	1.00[CEU][hapmap]
rs3176499	1.00[MEX][hapmap]
rs3176593	1.00[MEX][hapmap]
rs4257936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4292596	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4292597	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4294108	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4386890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4427076	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4486100	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs909061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv830991	chr7:47854530-48025996	Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv532120	chr7:47882757-48195869	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv470221	chr7:47917495-48354363	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv464442	chr7:47917495-48354820	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv606893	chr7:47917495-48354820	Flanking Active TSS Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47903400-47945000	Weak transcription	Brain Angular Gyrus	brain
2	chr7:47916400-47949000	Weak transcription	Right Ventricle	heart
3	chr7:47918200-47935200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:47924800-47933400	Weak transcription	Gastric	stomach
5	chr7:47925600-47946800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:47927400-47945000	Weak transcription	Brain Anterior Caudate	brain
7	chr7:47928000-47934600	Weak transcription	Adipose Nuclei	Adipose
8	chr7:47928200-47945000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:47928400-47957600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:47928800-47933000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:47929000-47933400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:47929400-47930600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:47929600-47930600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:47929600-47941000	Weak transcription	HSMMtube	muscle
15	chr7:47929600-47947000	Weak transcription	Left Ventricle	heart
16	chr7:47929800-47931400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:47930400-47931200	Enhancers	A549	lung
18	chr7:47930400-47945600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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