Variant report

Variant	rs912794
Chromosome Location	chr1:92876488-92876489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:92873264..92876771-chr1:92877671..92881787,3	K562	blood:
2	chr1:92868279..92870742-chr1:92876215..92879386,3	K562	blood:
3	chr1:92875271..92877424-chr1:92879256..92881787,3	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10747422	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10874637	0.83[ASN][1000 genomes]
rs10875319	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10875349	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11164288	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11164349	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11164546	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11577572	1.00[JPT][hapmap]
rs11585255	1.00[JPT][hapmap]
rs11588044	1.00[JPT][hapmap]
rs11588153	1.00[JPT][hapmap]
rs11589858	1.00[JPT][hapmap]
rs11803383	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11803457	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12024731	0.89[EUR][1000 genomes]
rs12086394	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12404806	1.00[JPT][hapmap]
rs12407622	1.00[JPT][hapmap]
rs12729867	1.00[JPT][hapmap]
rs12740246	1.00[JPT][hapmap]
rs12755781	1.00[JPT][hapmap]
rs12757533	1.00[JPT][hapmap]
rs1325435	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1487536	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1487540	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1542685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17519972	1.00[JPT][hapmap]
rs1872007	0.81[EUR][1000 genomes]
rs2046620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs2087194	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2391158	1.00[JPT][hapmap]
rs2391161	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3103176	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3103178	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3103181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3122321	0.89[EUR][1000 genomes]
rs3122323	0.81[EUR][1000 genomes]
rs3122327	0.87[EUR][1000 genomes]
rs3131813	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3131814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131820	0.96[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs3131827	0.90[EUR][1000 genomes]
rs3131828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3929737	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4393167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4414050	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4658298	1.00[JPT][hapmap]
rs4658299	1.00[JPT][hapmap]
rs4658300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4949888	1.00[JPT][hapmap]
rs58394161	0.83[ASN][1000 genomes]
rs6603962	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6603971	0.90[EUR][1000 genomes]
rs6603973	0.83[ASN][1000 genomes]
rs6603974	0.83[ASN][1000 genomes]
rs6604088	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6604090	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6661384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6663114	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6663118	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6663278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6668803	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6689366	0.92[EUR][1000 genomes]
rs6692287	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6702267	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs733012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs745793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7517541	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7518974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7520275	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7539757	0.86[EUR][1000 genomes]
rs7543947	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7554154	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9440085	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9943178	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs912794	KIAA1107	cis	cerebellum	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92874600-92877600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:92874800-92876800	Flanking Active TSS	Dnd41	blood
3	chr1:92875000-92877800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr1:92875000-92877800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:92875000-92877800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:92875000-92877800	Enhancers	Thymus	Thymus
7	chr1:92875200-92877600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:92875200-92877600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr1:92875400-92876800	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr1:92875400-92877600	Enhancers	Primary hematopoietic stem cells	blood
11	chr1:92875400-92877800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:92875400-92877800	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr1:92875600-92877400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr1:92875600-92877400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:92875800-92876600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr1:92875800-92877000	Enhancers	Spleen	Spleen
17	chr1:92876000-92876600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:92876000-92876600	Flanking Active TSS	Fetal Thymus	thymus
19	chr1:92876000-92876800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:92876000-92876800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr1:92876000-92877000	Enhancers	K562	blood
22	chr1:92876000-92877200	Enhancers	Duodenum Mucosa	Duodenum
23	chr1:92876000-92878400	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr1:92876200-92876600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
25	chr1:92876200-92876600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr1:92876200-92876600	Enhancers	GM12878-XiMat	blood
27	chr1:92876200-92877800	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr1:92876200-92877800	Enhancers	Colonic Mucosa	Colon
29	chr1:92876200-92877800	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr1:92876400-92876600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr1:92876400-92876600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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