Variant report

Variant	rs913684
Chromosome Location	chr14:25531375-25531376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10133686	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138503	0.82[EUR][1000 genomes]
rs10143439	0.82[EUR][1000 genomes]
rs10483292	0.85[JPT][hapmap]
rs11847778	0.81[EUR][1000 genomes]
rs11850786	0.82[CEU][hapmap]
rs17109382	0.82[CEU][hapmap]
rs17109406	0.81[CEU][hapmap]
rs17109462	0.81[CEU][hapmap]
rs17109491	0.82[JPT][hapmap]
rs17109498	0.85[JPT][hapmap]
rs17109509	0.85[JPT][hapmap]
rs17109515	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs17109521	0.85[JPT][hapmap]
rs17109529	0.85[JPT][hapmap]
rs17109537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17109547	0.98[EUR][1000 genomes]
rs1952491	0.81[EUR][1000 genomes]
rs1952500	0.81[EUR][1000 genomes]
rs1952501	0.85[JPT][hapmap]
rs1952507	0.81[EUR][1000 genomes]
rs1958381	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1958383	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1958384	0.81[AFR][1000 genomes]
rs2003997	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2094659	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2225269	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2225270	0.85[JPT][hapmap]
rs2332465	0.81[EUR][1000 genomes]
rs4522329	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58590969	0.81[EUR][1000 genomes]
rs60864714	0.86[AMR][1000 genomes]
rs61979908	0.81[EUR][1000 genomes]
rs61979911	0.81[EUR][1000 genomes]
rs61979914	0.82[EUR][1000 genomes]
rs6574172	0.95[EUR][1000 genomes]
rs7147345	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149439	0.85[JPT][hapmap]
rs7149869	0.97[ASN][1000 genomes]
rs7152812	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7153837	0.91[CEU][hapmap]
rs7153942	0.85[JPT][hapmap]
rs7155485	0.82[CEU][hapmap]
rs726519	0.85[YRI][hapmap]
rs8004569	0.85[JPT][hapmap]
rs8007052	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs8008544	0.81[EUR][1000 genomes]
rs8008618	0.91[CEU][hapmap]
rs8009099	0.91[CEU][hapmap]
rs8017234	0.85[JPT][hapmap]
rs8018041	0.85[JPT][hapmap]
rs8020392	0.85[YRI][hapmap]
rs873103	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25521600-25534400	Weak transcription	Pancreas	Pancrea
2	chr14:25531000-25531600	Enhancers	Stomach Mucosa	stomach

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